Description : SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan].
Gene families : OG_01_0000532 (OrthoFinder) Phylogenetic Tree(s): OG0000532_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: PTI_16G01630.1 | |
Cluster | HCCA: Cluster_16 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00020562.25 | tig00020562_g11151.t1 | RNA processing.RNA modification.rRNA/tRNA... | 0.05 | OrthoFinder | |
Cre03.g179860 | 30786956 | RNA processing.RNA modification.rRNA/tRNA... | 0.12 | OrthoFinder | |
Cz01g45120.t1 | No alias | Hypothetical protein | 0.07 | OrthoFinder | |
Cz01g45130.t1 | No alias | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.06 | OrthoFinder | |
EOD09582 | No alias | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.13 | OrthoFinder | |
EOD16004 | No alias | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.03 | OrthoFinder | |
OT_13G01820.1 | No alias | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.06 | OrthoFinder | |
Sro107_g053980.1 | Contig1548.g14073 | Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4a | 0.02 | OrthoFinder | |
Sro2022_g311530.1 | Contig3299.g25891 | Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4a | 0.06 | OrthoFinder | |
SymbC1.scaffold10744.1 | 10744.1 | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.01 | OrthoFinder | |
SymbC1.scaffold5305.6 | 5305.6 | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.01 | OrthoFinder | |
TP03G01810.1 | No alias | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.06 | OrthoFinder | |
Transcript_contig_57256 | 57256 | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.03 | OrthoFinder | |
Transcript_contig_59270 | 59270 | Hypothetical protein | 0.03 | OrthoFinder | |
Vocar.0015s0322.1 | 32898844 | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.04 | OrthoFinder | |
XM_002503226.1 | MICPUN_59410, 59410 | SAM-dependent methyltransferase RsmB/NOP2-type; CCT... | 0.1 | OrthoFinder | |
XM_003057672.1 | MicpuC2_15736, 15736 | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.08 | OrthoFinder | |
XM_003061244.1 | MicpuC2_45780, 45780 | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.06 | OrthoFinder | |
lcl|LHPG02000018.1_cds_PRW32836.1_3709 | PRW32836 | TRNA (cytosine(34)-C(5))-methyltransferase | 0.08 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008168 | methyltransferase activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | Enrichment |
MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
MF | GO:0003677 | DNA binding | IEP | Enrichment |
MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | Enrichment |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Enrichment |
MF | GO:0004386 | helicase activity | IEP | Enrichment |
MF | GO:0004518 | nuclease activity | IEP | Enrichment |
MF | GO:0004527 | exonuclease activity | IEP | Enrichment |
MF | GO:0005488 | binding | IEP | Enrichment |
MF | GO:0005515 | protein binding | IEP | Enrichment |
MF | GO:0005524 | ATP binding | IEP | Enrichment |
CC | GO:0005634 | nucleus | IEP | Enrichment |
CC | GO:0005730 | nucleolus | IEP | Enrichment |
CC | GO:0005732 | sno(s)RNA-containing ribonucleoprotein complex | IEP | Enrichment |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
BP | GO:0006351 | transcription, DNA-templated | IEP | Enrichment |
BP | GO:0006364 | rRNA processing | IEP | Enrichment |
BP | GO:0006396 | RNA processing | IEP | Enrichment |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
MF | GO:0008094 | ATPase, acting on DNA | IEP | Enrichment |
MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Enrichment |
BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
BP | GO:0016072 | rRNA metabolic process | IEP | Enrichment |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Enrichment |
MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | Enrichment |
MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Enrichment |
MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Enrichment |
BP | GO:0032774 | RNA biosynthetic process | IEP | Enrichment |
MF | GO:0034061 | DNA polymerase activity | IEP | Enrichment |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Enrichment |
CC | GO:0034457 | Mpp10 complex | IEP | Enrichment |
BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Enrichment |
BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
MF | GO:0036094 | small molecule binding | IEP | Enrichment |
MF | GO:0043167 | ion binding | IEP | Enrichment |
MF | GO:0043168 | anion binding | IEP | Enrichment |
CC | GO:0043226 | organelle | IEP | Enrichment |
CC | GO:0043227 | membrane-bounded organelle | IEP | Enrichment |
CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Enrichment |
BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Enrichment |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | Enrichment |
MF | GO:0097747 | RNA polymerase activity | IEP | Enrichment |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Enrichment |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001678 | MeTrfase_RsmB/NOP2 | 187 | 356 |
No external refs found! |