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  5. PTI_15G00340.1

PTI_15G00340.1


Description : Clathrin, heavy chain/VPS, 7-fold repeat; Clathrin-H-link; Clathrin, heavy chain, linker, core motif [Interproscan].


Gene families : OG_01_0002678 (OrthoFinder) Phylogenetic Tree(s): OG0002678_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_15G00340.1
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
Cz07g27260.t1 No alias Clathrin, heavy chain, propeller repeat; Clathrin, heavy... 0.03 OrthoFinder
Dusal.0114s00011.1 33202239 Clathrin-H-link; Clathrin, heavy chain, linker, core... 0.02 OrthoFinder
OT_01G01810.1 No alias Clathrin, heavy chain/VPS, 7-fold repeat;... 0.02 OrthoFinder
Sro1407_g270000.1 Contig1773.g15693 Clathrin heavy chain 1 0.08 OrthoFinder
Transcript_contig_54377 54377 Clathrin, heavy chain/VPS, 7-fold repeat;... 0.05 OrthoFinder
Vocar.0036s0110.1 32892264 Clathrin-H-link; Clathrin, heavy chain/VPS, 7-fold... 0.04 OrthoFinder
XM_002500509.1 MICPUN_105289, 105289 Clathrin, heavy chain, propeller repeat; Clathrin, heavy... 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61204.1_268 PRW61204 Clathrin heavy chain 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEA Interproscan
CC GO:0030132 clathrin coat of coated pit IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004347 glucose-6-phosphate isomerase activity IEP Enrichment
MF GO:0004371 glycerone kinase activity IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0005996 monosaccharide metabolic process IEP Enrichment
BP GO:0006006 glucose metabolic process IEP Enrichment
BP GO:0006066 alcohol metabolic process IEP Enrichment
BP GO:0006071 glycerol metabolic process IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006094 gluconeogenesis IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0016051 carbohydrate biosynthetic process IEP Enrichment
BP GO:0016567 protein ubiquitination IEP Enrichment
MF GO:0016860 intramolecular oxidoreductase activity IEP Enrichment
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
BP GO:0019318 hexose metabolic process IEP Enrichment
BP GO:0019319 hexose biosynthetic process IEP Enrichment
BP GO:0019400 alditol metabolic process IEP Enrichment
BP GO:0019751 polyol metabolic process IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
BP GO:0032446 protein modification by small protein conjugation IEP Enrichment
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044262 cellular carbohydrate metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0046364 monosaccharide biosynthetic process IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
MF GO:0061630 ubiquitin protein ligase activity IEP Enrichment
MF GO:0061659 ubiquitin-like protein ligase activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
BP GO:1901615 organic hydroxy compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000547 Clathrin_H-chain/VPS_repeat 1255 1396
IPR000547 Clathrin_H-chain/VPS_repeat 506 622
IPR000547 Clathrin_H-chain/VPS_repeat 945 1099
IPR000547 Clathrin_H-chain/VPS_repeat 792 920
IPR000547 Clathrin_H-chain/VPS_repeat 645 778
IPR000547 Clathrin_H-chain/VPS_repeat 1111 1248
IPR000547 Clathrin_H-chain/VPS_repeat 1406 1547
IPR015348 Clathrin_H-chain_linker_core 302 323
No external refs found!