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  5. PTI_14G01170.1

PTI_14G01170.1


Description : Helicase, C-terminal; Bromodomain; SNF2-related, N-terminal domain [Interproscan].


Gene families : OG_01_0000285 (OrthoFinder) Phylogenetic Tree(s): OG0000285_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_14G01170.1
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020614.39 tig00020614_g12152.t1 Chromatin organisation.chromatin remodeling... 0.07 OrthoFinder
Cre03.g189000 30787481 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder
Cre10.g430950 30790110 Chromatin organisation.chromatin remodeling... 0.07 OrthoFinder
Cz01g35190.t1 No alias SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
Cz01g35200.t1 No alias SNF2-related, N-terminal domain; Helicase, C-terminal... 0.05 OrthoFinder
Cz01g45220.t1 No alias SNF2-related, N-terminal domain; Helicase, C-terminal... 0.02 OrthoFinder
Dusal.0476s00007.1 33198117 SNF2-related, N-terminal domain; Helicase, C-terminal... 0.02 OrthoFinder
EOD21201 No alias SNF2-related, N-terminal domain [Interproscan]. 0.04 OrthoFinder
EOD37408 No alias SNF2-related, N-terminal domain [Interproscan]. 0.03 OrthoFinder
EOD38972 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.04 OrthoFinder
OT_08G04010.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.03 OrthoFinder
Sro795_g203520.1 Contig372.g5045 DNA repair and recombination protein RAD54-like (Fragment) 0.05 OrthoFinder
SymbC1.scaffold4409.2 4409.2 SNF2-related, N-terminal domain [Interproscan]. 0.01 OrthoFinder
TP13G03350.1 No alias SNF2-related, N-terminal domain; Helicase, C-terminal... 0.02 OrthoFinder
XM_002499964.1 MICPUN_99013, 99013 SNF2 super family (RAD54B) 0.04 OrthoFinder
XM_002502147.1 MICPUN_58699, 58699 SNF2 super family 0.04 OrthoFinder
XM_002508265.1 MICPUN_60933, 60933 SNF2 super family (RAD54) 0.03 OrthoFinder
XM_003057874.1 MicpuC2_57638, 57638 SNF2 super family (RAD54B) 0.02 OrthoFinder
lcl|BLLF01002931.1_cds_GFH25830.1_20307 HaLaN_23862, GFH25830 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Enrichment
CC GO:0000796 condensin complex IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006323 DNA packaging IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0007076 mitotic chromosome condensation IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
BP GO:0030261 chromosome condensation IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
InterPro domains Description Start Stop
IPR000330 SNF2_N 192 478
IPR001650 Helicase_C 560 662
IPR001487 Bromodomain 756 847
No external refs found!