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  5. PTI_13G04100.1

PTI_13G04100.1


Description : Zinc finger, UBR-type [Interproscan].


Gene families : OG_01_0002665 (OrthoFinder) Phylogenetic Tree(s): OG0002665_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_13G04100.1
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
Cz09g07150.t1 No alias Hypothetical protein 0.06 OrthoFinder
Cz09g07160.t1 No alias Zinc finger, UBR-type [Interproscan]. 0.04 OrthoFinder
EOD08783 No alias Hypothetical protein [Ensembl]. 0.01 OrthoFinder
EOD27699 No alias Hypothetical protein [Ensembl]. 0.02 OrthoFinder
Sro397_g134410.1 Contig157.g1779 Protein ligase UBR1 0.02 OrthoFinder
Sro397_g134430.1 Contig157.g1781 Protein ligase UBR1 0.02 OrthoFinder
TP09G01670.1 No alias Zinc finger, UBR-type [Interproscan]. 0.07 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492105.1_5288 KAA8492105 E3 ubiquitin-protein ligase UBR3 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003712 transcription coregulator activity IEP Enrichment
MF GO:0004402 histone acetyltransferase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006473 protein acetylation IEP Enrichment
BP GO:0006475 internal protein amino acid acetylation IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
BP GO:0016573 histone acetylation IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
BP GO:0018205 peptidyl-lysine modification IEP Enrichment
BP GO:0018393 internal peptidyl-lysine acetylation IEP Enrichment
BP GO:0018394 peptidyl-lysine acetylation IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
MF GO:0034212 peptide N-acetyltransferase activity IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0043543 protein acylation IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
MF GO:0060090 molecular adaptor activity IEP Enrichment
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
InterPro domains Description Start Stop
IPR003126 Znf_UBR 306 373
No external refs found!