Description : Pseudouridine synthase I, TruA, alpha/beta domain [Interproscan].
Gene families : OG_01_0000916 (OrthoFinder) Phylogenetic Tree(s): OG0000916_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: PTI_13G01760.1 | |
Cluster | HCCA: Cluster_4 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cre13.g591501 | 30784777 | RNA processing.RNA... | 0.02 | OrthoFinder | |
Dusal.0386s00003.1 | 33191488 | Hypothetical protein | 0.02 | OrthoFinder | |
EOD35461 | No alias | Putative tRNA-pseudouridine synthase [Ensembl]. | 0.03 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEA | Interproscan |
MF | GO:0003723 | RNA binding | IEA | Interproscan |
BP | GO:0009451 | RNA modification | IEA | Interproscan |
MF | GO:0009982 | pseudouridine synthase activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003725 | double-stranded RNA binding | IEP | Enrichment |
MF | GO:0003746 | translation elongation factor activity | IEP | Enrichment |
MF | GO:0004402 | histone acetyltransferase activity | IEP | Enrichment |
MF | GO:0004455 | ketol-acid reductoisomerase activity | IEP | Enrichment |
MF | GO:0004743 | pyruvate kinase activity | IEP | Enrichment |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Enrichment |
BP | GO:0006396 | RNA processing | IEP | Enrichment |
BP | GO:0006414 | translational elongation | IEP | Enrichment |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Enrichment |
MF | GO:0008175 | tRNA methyltransferase activity | IEP | Enrichment |
MF | GO:0008176 | tRNA (guanine-N7-)-methyltransferase activity | IEP | Enrichment |
BP | GO:0009058 | biosynthetic process | IEP | Enrichment |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | Enrichment |
BP | GO:0009081 | branched-chain amino acid metabolic process | IEP | Enrichment |
BP | GO:0009082 | branched-chain amino acid biosynthetic process | IEP | Enrichment |
BP | GO:0009116 | nucleoside metabolic process | IEP | Enrichment |
MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Enrichment |
MF | GO:0030955 | potassium ion binding | IEP | Enrichment |
MF | GO:0031420 | alkali metal ion binding | IEP | Enrichment |
MF | GO:0034212 | peptide N-acetyltransferase activity | IEP | Enrichment |
BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Enrichment |
BP | GO:0043647 | inositol phosphate metabolic process | IEP | Enrichment |
BP | GO:0044249 | cellular biosynthetic process | IEP | Enrichment |
BP | GO:0044281 | small molecule metabolic process | IEP | Enrichment |
MF | GO:0045182 | translation regulator activity | IEP | Enrichment |
BP | GO:0046164 | alcohol catabolic process | IEP | Enrichment |
BP | GO:0046174 | polyol catabolic process | IEP | Enrichment |
BP | GO:0046838 | phosphorylated carbohydrate dephosphorylation | IEP | Enrichment |
BP | GO:0046855 | inositol phosphate dephosphorylation | IEP | Enrichment |
BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | Enrichment |
MF | GO:0061733 | peptide-lysine-N-acetyltransferase activity | IEP | Enrichment |
BP | GO:0071545 | inositol phosphate catabolic process | IEP | Enrichment |
MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | Enrichment |
BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | Enrichment |
BP | GO:1901576 | organic substance biosynthetic process | IEP | Enrichment |
BP | GO:1901616 | organic hydroxy compound catabolic process | IEP | Enrichment |
BP | GO:1901657 | glycosyl compound metabolic process | IEP | Enrichment |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR020097 | PsdUridine_synth_TruA_a/b_dom | 295 | 411 |
No external refs found! |