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  5. PTI_12G00600.1

PTI_12G00600.1


Description : U3 small nucleolar ribonucleoprotein complex, subunit Mpp10 [Interproscan].


Gene families : OG_01_0004112 (OrthoFinder) Phylogenetic Tree(s): OG0004112_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_12G00600.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020604.12 tig00020604_g11847.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder
Cre08.g370601 30774105 Protein biosynthesis.cytosolic ribosome.small subunit... 0.27 OrthoFinder
Cz05g15180.t1 No alias U3 small nucleolar ribonucleoprotein complex, subunit... 0.05 OrthoFinder
Cz05g15190.t1 No alias U3 small nucleolar ribonucleoprotein complex, subunit... 0.07 OrthoFinder
EOD27130 No alias U3 small nucleolar ribonucleoprotein complex, subunit... 0.14 OrthoFinder
OT_05G01480.1 No alias U3 small nucleolar ribonucleoprotein complex, subunit... 0.17 OrthoFinder
Sro767_g199410.1 Contig2377.g19529 Nucleolar ribonucleoprotein protein MPP10 0.38 OrthoFinder
XM_002507036.1 MICPUN_113197, 113197 U3 small nucleolar ribonucleoprotein component (MPP10) 0.03 OrthoFinder
XM_003056286.1 MicpuC2_70680, 70680 U3 small nucleolar ribonucleoprotein component (MPP10) 0.02 OrthoFinder
lcl|BLLF01002042.1_cds_GFH22447.1_16924 HaLaN_19916, GFH22447 U3 small nucleolar ribonucleoprotein complex, subunit... 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59087.1_7023 PRW59087 U3 small nucleolar ribonucleo MPP10-like isoform X1 0.11 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492630.1_9323 KAA8492630 U3 small nucleolar ribonucleoprotein MPP10 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
CC GO:0034457 Mpp10 complex IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0036265 RNA (guanine-N7)-methylation IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR012173 Mpp10 69 701
No external refs found!