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  5. PTI_09G03560.1

PTI_09G03560.1


Description : Helicase, C-terminal; Domain of unknown function DUF4217; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000319 (OrthoFinder) Phylogenetic Tree(s): OG0000319_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_09G03560.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000441.11 tig00000441_g705.t1 DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.03 OrthoFinder
Cpa|evm.model.tig00000615.43 tig00000615_g2571.t1 DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre03.g156150 30787649 DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana 0.25 OrthoFinder
Cre03.g188550 30787162 DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.17 OrthoFinder
Cre07.g314900 30775364 DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.26 OrthoFinder
Cz01g13050.t1 No alias Domain of unknown function DUF4217; Helicase,... 0.12 OrthoFinder
Cz04g34220.t1 No alias Domain of unknown function DUF4217; Helicase,... 0.18 OrthoFinder
Cz14g21220.t1 No alias Domain of unknown function DUF4217; Helicase,... 0.06 OrthoFinder
EOD29706 No alias Helicase, C-terminal; Domain of unknown function... 0.14 OrthoFinder
EOD32210 No alias Helicase, C-terminal [Interproscan]. 0.02 OrthoFinder
OT_08G01350.1 No alias Helicase, C-terminal; Domain of unknown function... 0.11 OrthoFinder
OT_10G00320.1 No alias Helicase, C-terminal; Domain of unknown function... 0.2 OrthoFinder
Sro1516_g279100.1 Contig3898.g29880 RNA helicase HAS1 0.24 OrthoFinder
Sro625_g177670.1 Contig691.g8105 RNA helicase DBP4 0.33 OrthoFinder
Sro967_g225820.1 Contig1083.g10521 Dependent RNA helicase 0.15 OrthoFinder
TP03G01160.1 No alias Domain of unknown function DUF4217; Helicase,... 0.03 OrthoFinder
TP03G05140.1 No alias Domain of unknown function DUF4217; Helicase,... 0.18 OrthoFinder
Transcript_contig_2473 2473 Helicase, C-terminal; Domain of unknown function DUF4217... 0.1 OrthoFinder
UNPLg00617.t1 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.02 OrthoFinder
UNPLg00618.t1 No alias Hypothetical protein 0.02 OrthoFinder
UNPLg00619.t1 No alias Hypothetical protein 0.01 OrthoFinder
Vocar.0011s0222.1 32895328 Domain of unknown function DUF4217; DEAD/DEAH box... 0.02 OrthoFinder
Vocar.0019s0050.1 32892772 Domain of unknown function DUF4217; DEAD/DEAH box... 0.04 OrthoFinder
Vocar.0072s0011.1 32898787 Domain of unknown function DUF4217; DEAD/DEAH box... 0.03 OrthoFinder
XM_002503194.1 MICPUN_82943, 82943 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.16 OrthoFinder
XM_002505580.1 MICPUN_87736, 87736 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.16 OrthoFinder
XM_002508993.1 MICPUN_66348, 66348 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.12 OrthoFinder
XM_003061213.1 MicpuC2_41358, 41358 Helicase, C-terminal; Domain of unknown function... 0.05 OrthoFinder
XM_003063698.1 MicpuC2_22865, 22865 Helicase, C-terminal; Domain of unknown function... 0.08 OrthoFinder
lcl|BLLF01000028.1_cds_GFH06227.1_704 HaLaN_00823, GFH06227 RNA helicase 0.04 OrthoFinder
lcl|BLLF01000456.1_cds_GFH11993.1_6470 HaLaN_07604, GFH11993 RNA helicase 0.06 OrthoFinder
lcl|BLLF01003854.1_cds_GFH28385.1_22862 HaLaN_26865, GFH28385 RNA helicase 0.03 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60362.1_4133 PRW60362 DEAD-box ATP-dependent RNA helicase 17 0.07 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59153.1_7055 PRW59153 ATP-dependent RNA helicase HAS1 0.18 OrthoFinder
lcl|LHPG02000018.1_cds_PRW33079.1_3833 PRW33079 DEAD-box ATP-dependent RNA helicase 32 0.17 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494107.1_3971 KAA8494107 DEAD-box ATP-dependent RNA helicase 17 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003883 CTP synthase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Enrichment
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0036265 RNA (guanine-N7)-methylation IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 338 441
IPR011545 DEAD/DEAH_box_helicase_dom 122 295
IPR025313 DUF4217 483 543
No external refs found!