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  5. PTI_09G02940.1

PTI_09G02940.1


Description : LSM domain, eukaryotic/archaea-type [Interproscan].


Gene families : OG_01_0004559 (OrthoFinder) Phylogenetic Tree(s): OG0004559_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_09G02940.1
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
Cre13.g566050 30784080 RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder
Cz16g08110.t1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
Dusal.1302s00003.1 33197640 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.01 OrthoFinder
Vocar.0028s0104.1 32895704 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005543 phospholipid binding IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
MF GO:0015035 protein-disulfide reductase activity IEP Enrichment
MF GO:0015036 disulfide oxidoreductase activity IEP Enrichment
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 27 81
No external refs found!