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  5. PTI_09G01530.1

PTI_09G01530.1


Description : Reverse transcriptase, RNA-dependent DNA polymerase [Interproscan].


Gene families : OG_01_0000066 (OrthoFinder) Phylogenetic Tree(s): OG0000066_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_09G01530.1
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
PTI_00G01000.1 No alias Hypothetical protein 0.04 OrthoFinder
PTI_00G02170.1 No alias Hypothetical protein 0.09 OrthoFinder
PTI_00G02270.1 No alias Hypothetical protein 0.05 OrthoFinder
PTI_00G02280.1 No alias Hypothetical protein 0.05 OrthoFinder
PTI_00G02470.1 No alias Hypothetical protein 0.04 OrthoFinder
PTI_01G05240.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.09 OrthoFinder
PTI_03G00520.1 No alias Hypothetical protein 0.06 OrthoFinder
PTI_03G05910.1 No alias Hypothetical protein 0.04 OrthoFinder
PTI_03G05920.1 No alias Hypothetical protein 0.11 OrthoFinder
PTI_03G05970.1 No alias Hypothetical protein 0.08 OrthoFinder
PTI_06G02350.1 No alias Hypothetical protein 0.05 OrthoFinder
PTI_09G02860.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.09 OrthoFinder
PTI_16G00080.1 No alias Hypothetical protein 0.07 OrthoFinder
PTI_17G02300.1 No alias Hypothetical protein 0.03 OrthoFinder
PTI_27G01660.1 No alias Hypothetical protein 0.05 OrthoFinder
PTI_27G01670.1 No alias Hypothetical protein 0.05 OrthoFinder
PTI_33G00250.1 No alias Hypothetical protein 0.08 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
CC GO:0031464 Cul4A-RING E3 ubiquitin ligase complex IEP Enrichment
MF GO:0046422 violaxanthin de-epoxidase activity IEP Enrichment
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 1305 1522
No external refs found!