1. Home
  2. Species
  3. Phaeodactylum tricornutum
  4. Sequence
  5. PTI_09G00360.1

PTI_09G00360.1


Description : Coatomer beta subunit, C-terminal; Coatomer beta subunit, appendage platform domain; Clathrin/coatomer adaptor, adaptin-like, N-terminal [Interproscan].


Gene families : OG_01_0002435 (OrthoFinder) Phylogenetic Tree(s): OG0002435_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_09G00360.1
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020553.156 tig00020553_g10647.t1 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 OrthoFinder
Cre04.g217921 30791161, COPB1 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.05 OrthoFinder
Cz05g37150.t1 No alias Coatomer beta subunit, appendage platform domain;... 0.04 OrthoFinder
Dusal.0035s00026.1 33196664 Coatomer beta subunit, appendage platform domain;... 0.01 OrthoFinder
EOD12644 No alias COPB1, beta subunit of the coatomer [Ensembl]. 0.05 OrthoFinder
EOD12708 No alias COPB1, beta subunit of the coatomer [Ensembl]. 0.05 OrthoFinder
OT_04G02630.1 No alias Coatomer beta subunit, appendage platform domain;... 0.02 OrthoFinder
Sro1540_g280870.1 Contig2880.g23009 Coatomer subunit beta 0.07 OrthoFinder
TP04G07120.1 No alias Clathrin/coatomer adaptor, adaptin-like, N-terminal;... 0.03 OrthoFinder
Transcript_contig_54238 54238 Coatomer beta subunit, appendage platform domain;... 0.05 OrthoFinder
Vocar.0046s0045.1 32892975 Coatomer beta subunit, appendage platform domain;... 0.03 OrthoFinder
XM_003057574.1 MicpuC2_32783, 32783 Coatomer subunit beta (BCOP) 0.03 OrthoFinder
lcl|BLLF01001130.1_cds_GFH17326.1_11803 HaLaN_13936, GFH17326 Beta-coat protein 0.03 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57265.1_8886 PRW57265 Coatomer subunit beta-1 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499866.1_8819 KAA8499866 Coatomer subunit beta-1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
CC GO:0030126 COPI vesicle coat IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0004576 oligosaccharyl transferase activity IEP Enrichment
MF GO:0005096 GTPase activator activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006887 exocytosis IEP Enrichment
BP GO:0007062 sister chromatid cohesion IEP Enrichment
BP GO:0007064 mitotic sister chromatid cohesion IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016197 endosomal transport IEP Enrichment
BP GO:0016482 cytosolic transport IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
CC GO:0030119 AP-type membrane coat adaptor complex IEP Enrichment
CC GO:0030131 clathrin adaptor complex IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030906 retromer, cargo-selective complex IEP Enrichment
CC GO:0031390 Ctf18 RFC-like complex IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042147 retrograde transport, endosome to Golgi IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
InterPro domains Description Start Stop
IPR029446 COPB1_appendage_platform_dom 836 964
IPR002553 Clathrin/coatomer_adapt-like_N 29 526
IPR011710 Coatomer_bsu_C 693 830
No external refs found!