PTI_08G03190.1

Description : RNA recognition motif domain [Interproscan].

Gene families : OG_01_0000048 (OrthoFinder) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: PTI_08G03190.1
Cluster	HCCA: Cluster_104

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00020553.146	tig00020553_g10637.t1	Serine/arginine-rich splicing factor SR45a...	0.02	OrthoFinder
Cpa\|evm.model.tig00021433.15	tig00021433_g21269.t1	No description available	0.01	OrthoFinder
EOD31760	No alias	RNA recognition motif domain [Interproscan].	0.01	OrthoFinder
lcl\|BLLF01000187.1_cds_GFH08821.1_3298	HaLaN_03852, GFH08821	RRM domain-containing protein	0.01	OrthoFinder
lcl\|LHPG02000015.1_cds_PRW33883.1_2944	PRW33883	Serine arginine repetitive matrix 5-like isoform X2	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003909	DNA ligase activity	IEP	Enrichment
MF	GO:0003910	DNA ligase (ATP) activity	IEP	Enrichment
BP	GO:0006310	DNA recombination	IEP	Enrichment
MF	GO:0016670	oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor	IEP	Enrichment
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Enrichment
MF	GO:0016972	thiol oxidase activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	178	247

External Links

No external refs found!