1. Home
  2. Species
  3. Phaeodactylum tricornutum
  4. Sequence
  5. PTI_08G03170.1

PTI_08G03170.1


Description : Ubiquitin conjugation factor E4, core; U box domain [Interproscan].


Gene families : OG_01_0001482 (OrthoFinder) Phylogenetic Tree(s): OG0001482_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_08G03170.1
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000076.105 tig00000076_g2403.t1 Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana 0.07 OrthoFinder
Cre09.g398350 30780774 Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana 0.09 OrthoFinder
Cz02g21330.t1 No alias U box domain; Ubiquitin conjugation factor E4, core... 0.02 OrthoFinder
Dusal.0043s00001.1 33199638 U box domain; Ubiquitin conjugation factor E4, core... 0.03 OrthoFinder
EOD22834 No alias Ubiquitin conjugation factor E4, core; U box domain... 0.04 OrthoFinder
Sro1843_g301160.1 Contig4701.g34964 Conjugation factor E4 0.24 OrthoFinder
TP06G04970.1 No alias Ubiquitin conjugation factor E4, core; U box domain... 0.03 OrthoFinder
XM_002502295.1 MICPUN_108353, 108353 U box domain; Ubiquitin conjugation factor E4, core... 0.05 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEA Interproscan
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
CC GO:0000502 proteasome complex IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
CC GO:0008537 proteasome activator complex IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0009894 regulation of catabolic process IEP Enrichment
BP GO:0010498 proteasomal protein catabolic process IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042176 regulation of protein catabolic process IEP Enrichment
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
MF GO:0060090 molecular adaptor activity IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR003613 Ubox_domain 1067 1137
IPR019474 Ub_conjug_fac_E4_core 452 1048
No external refs found!