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  5. PTI_07G04250.1

PTI_07G04250.1


Description : HRDC domain; 3'-5' exonuclease domain; R3H domain [Interproscan].


Gene families : OG_01_0000497 (OrthoFinder) Phylogenetic Tree(s): OG0000497_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_07G04250.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
Cre12.g524350 30792926, HUS1 No description available 0.01 OrthoFinder
Dusal.0386s00004.1 33191494 3'-5' exonuclease domain; HRDC domain [Interproscan]. 0.01 OrthoFinder
EOD22656 No alias HRDC domain; 3'-5' exonuclease domain [Interproscan]. 0.01 OrthoFinder
TP16G00970.1 No alias Hypothetical protein 0.02 OrthoFinder
Vocar.0016s0174.1 32898045 HRDC domain; 3'-5' exonuclease domain [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492897.1_2633 KAA8492897 Exosome component 10 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
BP GO:0006139 nucleobase-containing compound metabolic process IEA Interproscan
MF GO:0008408 3'-5' exonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP Enrichment
MF GO:0003964 RNA-directed DNA polymerase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006575 cellular modified amino acid metabolic process IEP Enrichment
BP GO:0006749 glutathione metabolic process IEP Enrichment
BP GO:0006751 glutathione catabolic process IEP Enrichment
MF GO:0016840 carbon-nitrogen lyase activity IEP Enrichment
MF GO:0016842 amidine-lyase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
CC GO:0030119 AP-type membrane coat adaptor complex IEP Enrichment
CC GO:0030131 clathrin adaptor complex IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
BP GO:0042219 cellular modified amino acid catabolic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043171 peptide catabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044273 sulfur compound catabolic process IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR002121 HRDC_dom 596 643
IPR002562 3'-5'_exonuclease_dom 237 407
IPR001374 R3H_dom 85 126
No external refs found!