1. Home
  2. Species
  3. Phaeodactylum tricornutum
  4. Sequence
  5. PTI_07G02220.1

PTI_07G02220.1


Description : Proteasome, subunit alpha/beta [Interproscan].


Gene families : OG_01_0002281 (OrthoFinder) Phylogenetic Tree(s): OG0002281_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_07G02220.1
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020554.44 tig00020554_g10827.t1 Protein degradation.26S proteasome.20S core... 0.12 OrthoFinder
Cre10.g461950 30789807 Protein degradation.26S proteasome.20S core... 0.33 OrthoFinder
Cz15g12180.t1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.08 OrthoFinder
OT_15G00470.1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.03 OrthoFinder
Sro1101_g241430.1 Contig3867.g29745 Proteasome subunit pbs-5 0.32 OrthoFinder
TP05G04700.1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.27 OrthoFinder
Transcript_contig_55415 55415 Proteasome, subunit alpha/beta [Interproscan]. 0.03 OrthoFinder
Vocar.0029s0037.1 32887548 Proteasome, subunit alpha/beta [Interproscan]. 0.04 OrthoFinder
XM_002506771.1 MICPUN_96064, 96064 Proteasome, subunit alpha/beta [Interproscan]. 0.03 OrthoFinder
XM_003061006.1 MicpuC2_60944, 60944 Proteasome, subunit alpha/beta [Interproscan]. 0.07 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56251.1_10324 PRW56251 20S proteasome beta subunit type beta 5 isoform B 0.05 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495411.1_1409 KAA8495411 Proteasome subunit beta type-5 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
CC GO:0000502 proteasome complex IEP Enrichment
MF GO:0004176 ATP-dependent peptidase activity IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0004559 alpha-mannosidase activity IEP Enrichment
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
CC GO:0008537 proteasome activator complex IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009894 regulation of catabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010498 proteasomal protein catabolic process IEP Enrichment
MF GO:0015923 mannosidase activity IEP Enrichment
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Enrichment
BP GO:0016567 protein ubiquitination IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0031072 heat shock protein binding IEP Enrichment
BP GO:0032446 protein modification by small protein conjugation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042176 regulation of protein catabolic process IEP Enrichment
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0045048 protein insertion into ER membrane IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0051205 protein insertion into membrane IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
MF GO:0061630 ubiquitin protein ligase activity IEP Enrichment
MF GO:0061659 ubiquitin-like protein ligase activity IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 72 251
No external refs found!