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  5. PTI_07G02090.1

PTI_07G02090.1


Description : 60S ribosomal protein L10P, insertion domain; Ribosomal protein L10P [Interproscan].


Gene families : OG_01_0003015 (OrthoFinder) Phylogenetic Tree(s): OG0003015_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_07G02090.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cre06.g261700 30779803 No description available 0.03 OrthoFinder
Cz09g30160.t1 No alias Ribosomal protein L10P; 60S ribosomal protein L10P,... 0.04 OrthoFinder
EOD42017 No alias 60S ribosomal protein L10P, insertion domain; Ribosomal... 0.05 OrthoFinder
OT_17G00690.1 No alias Ribosomal protein L10P; 60S ribosomal protein L10P,... 0.03 OrthoFinder
Sro1552_g281880.1 Contig3671.g28371 Turnover protein 4 homolog 0.09 OrthoFinder
Sro2516_g329950.1 Contig716.g8270 Turnover protein 4 homolog 0.08 OrthoFinder
TP16G01380.1 No alias 60S ribosomal protein L10P, insertion domain; Ribosomal... 0.04 OrthoFinder
XM_002508822.1 MICPUN_85635, 85635 Ribosomal protein L10P; 60S ribosomal protein L10P,... 0.02 OrthoFinder
XM_003063924.1 MicpuC2_30129, 30129 60S ribosomal protein L10P, insertion domain; Ribosomal... 0.03 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45636.1_1527 PRW45636 MRNA turnover 4-like protein 0.04 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493760.1_4522 KAA8493760 MRNA turnover protein 4-like 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0042254 ribosome biogenesis IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003879 ATP phosphoribosyltransferase activity IEP Enrichment
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Enrichment
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP Enrichment
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0005047 signal recognition particle binding IEP Enrichment
MF GO:0005048 signal sequence binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006360 transcription by RNA polymerase I IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
MF GO:0042277 peptide binding IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001790 Ribosomal_L10P 20 125
IPR040637 RL10P_insert 133 206
No external refs found!