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  5. PTI_05G02690.1

PTI_05G02690.1


Description : GTP binding domain [Interproscan].


Gene families : OG_01_0002558 (OrthoFinder) Phylogenetic Tree(s): OG0002558_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_05G02690.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cre16.g680944 30777393 GTPase LSG1-1 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cz07g19010.t1 No alias GTP binding domain [Interproscan]. 0.04 OrthoFinder
Dusal.0022s00030.1 33193915 GTP binding domain [Interproscan]. 0.05 OrthoFinder
EOD12183 No alias Hypothetical protein [Ensembl]. 0.07 OrthoFinder
EOD12184 No alias Hypothetical protein [Ensembl]. 0.04 OrthoFinder
EOD18378 No alias GTP binding domain [Interproscan]. 0.19 OrthoFinder
OT_14G01210.1 No alias GTP binding domain [Interproscan]. 0.18 OrthoFinder
Vocar.0022s0160.1 32891761 GTP binding domain [Interproscan]. 0.03 OrthoFinder
XM_002505771.1 MICPUN_66874, 66874 GTP binding domain [Interproscan]. 0.07 OrthoFinder
lcl|BLLF01001046.1_cds_GFH16749.1_11226 HaLaN_13234, GFH16749 CP-type G domain-containing protein 0.01 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61150.1_293 PRW61150 Large subunit GTPase 1-like protein 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR006073 GTP-bd 350 412
No external refs found!