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  5. PTI_05G00530.1

PTI_05G00530.1


Description : RING-type zinc-finger, LisH dimerisation motif [Interproscan].


Gene families : OG_01_0001141 (OrthoFinder) Phylogenetic Tree(s): OG0001141_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_05G00530.1
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
Cz04g24160.t1 No alias Zinc finger, C3HC4 type (RING finger) [Interproscan]. 0.02 OrthoFinder
Sro13_g010370.1 Contig337.g4578 E3 ubiquitin-protein ligase 0.03 OrthoFinder
TP11G02960.1 No alias RING-type zinc-finger, LisH dimerisation motif [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8493995.1_3859 KAA8493995 E3 ubiquitin-protein ligase 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
BP GO:0051259 protein complex oligomerization IEP Enrichment
MF GO:0120227 acyl-CoA binding IEP Enrichment
MF GO:1901567 fatty acid derivative binding IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR027370 Znf-RING_LisH 53 80
No external refs found!