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  5. PTI_04G04960.1

PTI_04G04960.1


Description : AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core; Glycosyl transferase CAP10 domain [Interproscan].


Gene families : OG_01_0000083 (OrthoFinder) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_04G04960.1
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000525.10 tig00000525_g1953.t1 Cell division control protein 48 homolog C... 0.01 OrthoFinder
Dusal.0191s00006.1 33186464 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain;... 0.03 OrthoFinder
Sro287_g108550.1 Contig252.g3096 Transitional endoplasmic reticulum ATPase 0.02 OrthoFinder
Sro66_g037380.1 Contig399.g5408 Transitional endoplasmic reticulum ATPase 0.02 OrthoFinder
Sro98_g050450.1 Contig3362.g26337 Transitional endoplasmic reticulum ATPase 0.04 OrthoFinder
TP04G04850.1 No alias ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.02 OrthoFinder
TP05G03870.1 No alias ATPase, AAA-type, core; CDC48, domain 2; AAA ATPase,... 0.02 OrthoFinder
Transcript_contig_54277 54277 CDC48, N-terminal subdomain; AAA ATPase, AAA+ lid... 0.01 OrthoFinder
lcl|BLLF01002883.1_cds_GFH25671.1_20148 HaLaN_23672, GFH25671 Spastin 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Enrichment
MF GO:0001671 ATPase activator activity IEP Enrichment
MF GO:0003756 protein disulfide isomerase activity IEP Enrichment
MF GO:0004109 coproporphyrinogen oxidase activity IEP Enrichment
MF GO:0004176 ATP-dependent peptidase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Enrichment
MF GO:0016864 intramolecular oxidoreductase activity, transposing S-S bonds IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
MF GO:0042802 identical protein binding IEP Enrichment
MF GO:0042803 protein homodimerization activity IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
MF GO:0051087 chaperone binding IEP Enrichment
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 671 803
IPR003959 ATPase_AAA_core 397 525
IPR041569 AAA_lid_3 827 866
IPR041569 AAA_lid_3 549 584
IPR006598 CAP10 1267 1432
No external refs found!