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  5. PTI_03G05440.1

PTI_03G05440.1


Description : RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].


Gene families : OG_01_0001971 (OrthoFinder) Phylogenetic Tree(s): OG0001971_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_03G05440.1
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000711.41 tig00000711_g3404.t1 Cell cycle.mitosis and meiosis.chromatin... 0.06 OrthoFinder
Cre12.g493400 30791789, SMC4 Cell cycle.mitosis and meiosis.chromatin... 0.05 OrthoFinder
Cz03g14220.t1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.07 OrthoFinder
Cz03g14230.t1 No alias RecF/RecN/SMC, N-terminal [Interproscan]. 0.08 OrthoFinder
Dusal.0297s00010.1 33197376 RecF/RecN/SMC, N-terminal [Interproscan]. 0.01 OrthoFinder
Dusal.0297s00013.1 33197366 RecF/RecN/SMC, N-terminal [Interproscan]. 0.04 OrthoFinder
EOD07120 No alias RecF/RecN/SMC, N-terminal [Interproscan]. 0.07 OrthoFinder
EOD10750 No alias RecF/RecN/SMC, N-terminal [Interproscan]. 0.06 OrthoFinder
EOD30554 No alias SMCs flexible hinge [Interproscan]. 0.07 OrthoFinder
EOD30555 No alias RecF/RecN/SMC, N-terminal [Interproscan]. 0.02 OrthoFinder
OT_06G01300.1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.08 OrthoFinder
Sro1170_g248720.1 Contig3531.g27301 Structural maintenance of chromosomes protein 4 (Fragment) 0.11 OrthoFinder
TP14G01310.1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.07 OrthoFinder
Vocar.0031s0036.1 32890031 SMCs flexible hinge; RecF/RecN/SMC, N-terminal [Interproscan]. 0.04 OrthoFinder
XM_002500796.1 MICPUN_56721, 56721 Condensin complex component 0.05 OrthoFinder
XM_003059384.1 MicpuC2_33825, 33825 Condensin complex component 0.03 OrthoFinder
lcl|BLLF01001573.1_cds_GFH20090.1_14567 HaLaN_17159, GFH20090 Structural maintenance of chromosomes protein 4 0.03 OrthoFinder
lcl|BLLF01001573.1_cds_GFH20092.1_14569 HaLaN_17161, GFH20092 Structural maintenance of chromosomes protein 0.01 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57046.1_8805 PRW57046 Structural maintenance of chromosomes 4 0.07 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499969.1_8922 KAA8499969 Structural maintenance of chromosomes protein 4 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0051276 chromosome organization IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000444 MIS12/MIND type complex IEP Enrichment
CC GO:0000776 kinetochore IEP Enrichment
CC GO:0000786 nucleosome IEP Enrichment
CC GO:0000796 condensin complex IEP Enrichment
CC GO:0000818 nuclear MIS12/MIND complex IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Enrichment
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
BP GO:0006323 DNA packaging IEP Enrichment
BP GO:0006595 polyamine metabolic process IEP Enrichment
BP GO:0006596 polyamine biosynthetic process IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0007076 mitotic chromosome condensation IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0008146 sulfotransferase activity IEP Enrichment
BP GO:0008216 spermidine metabolic process IEP Enrichment
BP GO:0008295 spermidine biosynthetic process IEP Enrichment
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
BP GO:0009309 amine biosynthetic process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019207 kinase regulator activity IEP Enrichment
MF GO:0019887 protein kinase regulator activity IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
BP GO:0030261 chromosome condensation IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 877 1292
IPR003395 RecF/RecN/SMC_N 38 737
IPR010935 SMC_hinge 575 687
No external refs found!