1. Home
  2. Species
  3. Phaeodactylum tricornutum
  4. Sequence
  5. PTI_03G04630.1

PTI_03G04630.1


Description : ABC transporter type 1, transmembrane domain; ABC transporter-like [Interproscan].


Gene families : OG_01_0000039 (OrthoFinder) Phylogenetic Tree(s): OG0000039_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_03G04630.1
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020553.190 tig00020553_g10680.t1 ABC transporter C family member 4 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00020553.191 tig00020553_g10681.t1 ABC transporter C family member 11 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre07.g325761 30775279 ABC transporter C family member 2 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre13.g564900 30784450, MRP3 Solute transport.primary active transport.ABC... 0.02 OrthoFinder
EOD08599 No alias ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
EOD26066 No alias EF-hand domain; ABC transporter type 1, transmembrane... 0.02 OrthoFinder
EOD33714 No alias ABC transporter type 1, transmembrane domain; ABC... 0.03 OrthoFinder
EOD37777 No alias Multidrug resistance-associated protein, ABC superfamily... 0.02 OrthoFinder
OT_03G00040.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.03 OrthoFinder
Sro1659_g289200.1 Contig194.g2262 Oligomycin resistance ATP-dependent permease YOR1 0.03 OrthoFinder
Sro1659_g289240.1 Contig194.g2266 Oligomycin resistance ATP-dependent permease YOR1 0.02 OrthoFinder
Sro183_g079600.1 Contig3056.g24305 Multiple drug resistance-associated protein-like transporter 1 0.02 OrthoFinder
Transcript_contig_17 17 ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
Transcript_contig_56405 56405 ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 194 475
IPR011527 ABC1_TM_dom 966 1226
IPR003439 ABC_transporter-like_ATP-bd 547 714
IPR003439 ABC_transporter-like_ATP-bd 1341 1491
No external refs found!