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Description : Pep3/Vps18/deep orange [Interproscan].
Gene families : OG_01_0003046 (OrthoFinder) Phylogenetic Tree(s): OG0003046_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: PTI_03G03630.1 | |
| Cluster | HCCA: Cluster_96 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00001486.1 | tig00001486_g8918.t1 | Vesicle trafficking.target membrane... | 0.02 | OrthoFinder | |
| Cre07.g328550 | 30774859, VPS18 | Vesicle trafficking.target membrane... | 0.02 | OrthoFinder | |
| Cz12g14060.t1 | No alias | Pep3/Vps18/deep orange [Interproscan]. | 0.02 | OrthoFinder | |
| EOD05577 | No alias | Vacuolar protein sorting 18 [Ensembl]. | 0.02 | OrthoFinder | |
| Sro1179_g249660.1 | Contig1870.g16351 | Protein sorting-associated protein 18 homolog | 0.07 | OrthoFinder | |
| Sro609_g174910.1 | Contig285.g3723 | Vacuolar Protein | 0.04 | OrthoFinder | |
| Transcript_contig_83661 | 83661 | Hypothetical protein | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000151 | ubiquitin ligase complex | IEP | Enrichment |
| CC | GO:0000152 | nuclear ubiquitin ligase complex | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| CC | GO:0005643 | nuclear pore | IEP | Enrichment |
| CC | GO:0005680 | anaphase-promoting complex | IEP | Enrichment |
| BP | GO:0006259 | DNA metabolic process | IEP | Enrichment |
| BP | GO:0006265 | DNA topological change | IEP | Enrichment |
| BP | GO:0006904 | vesicle docking involved in exocytosis | IEP | Enrichment |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | Enrichment |
| BP | GO:0006996 | organelle organization | IEP | Enrichment |
| BP | GO:0009966 | regulation of signal transduction | IEP | Enrichment |
| BP | GO:0010646 | regulation of cell communication | IEP | Enrichment |
| BP | GO:0016192 | vesicle-mediated transport | IEP | Enrichment |
| BP | GO:0016197 | endosomal transport | IEP | Enrichment |
| BP | GO:0016482 | cytosolic transport | IEP | Enrichment |
| MF | GO:0017056 | structural constituent of nuclear pore | IEP | Enrichment |
| BP | GO:0022406 | membrane docking | IEP | Enrichment |
| BP | GO:0023051 | regulation of signaling | IEP | Enrichment |
| CC | GO:0031461 | cullin-RING ubiquitin ligase complex | IEP | Enrichment |
| BP | GO:0032012 | regulation of ARF protein signal transduction | IEP | Enrichment |
| BP | GO:0042147 | retrograde transport, endosome to Golgi | IEP | Enrichment |
| BP | GO:0046578 | regulation of Ras protein signal transduction | IEP | Enrichment |
| BP | GO:0046907 | intracellular transport | IEP | Enrichment |
| BP | GO:0048278 | vesicle docking | IEP | Enrichment |
| BP | GO:0048583 | regulation of response to stimulus | IEP | Enrichment |
| BP | GO:0051056 | regulation of small GTPase mediated signal transduction | IEP | Enrichment |
| BP | GO:0051169 | nuclear transport | IEP | Enrichment |
| BP | GO:0051276 | chromosome organization | IEP | Enrichment |
| BP | GO:0051640 | organelle localization | IEP | Enrichment |
| BP | GO:0051641 | cellular localization | IEP | Enrichment |
| BP | GO:0051649 | establishment of localization in cell | IEP | Enrichment |
| BP | GO:0071103 | DNA conformation change | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| BP | GO:0140029 | exocytic process | IEP | Enrichment |
| BP | GO:0140056 | organelle localization by membrane tethering | IEP | Enrichment |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| BP | GO:1902531 | regulation of intracellular signal transduction | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR007810 | Pep3_Vps18 | 453 | 652 |
| No external refs found! |