1. Home
  2. Species
  3. Phaeodactylum tricornutum
  4. Sequence
  5. PTI_02G06560.1

PTI_02G06560.1


Description : Translation Initiation factor eIF- 4e [Interproscan].


Gene families : OG_01_0001366 (OrthoFinder) Phylogenetic Tree(s): OG0001366_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_02G06560.1
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
Sro436_g142650.1 Contig228.g2753 Factor isoform 4E-2 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003743 translation initiation factor activity IEA Interproscan
BP GO:0006413 translational initiation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003847 1-alkyl-2-acetylglycerophosphocholine esterase activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004549 tRNA-specific ribonuclease activity IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0016042 lipid catabolic process IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
CC GO:0017053 transcription repressor complex IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0030099 myeloid cell differentiation IEP Enrichment
BP GO:0030154 cell differentiation IEP Enrichment
BP GO:0030218 erythrocyte differentiation IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
BP GO:0032502 developmental process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Enrichment
BP GO:0048869 cellular developmental process IEP Enrichment
MF GO:0052689 carboxylic ester hydrolase activity IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0097526 spliceosomal tri-snRNP complex IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001040 TIF_eIF_4E 41 195
No external refs found!