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  5. PTI_02G06010.1

PTI_02G06010.1


Description : 26S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1; Proteasome component (PCI) domain [Interproscan].


Gene families : OG_01_0003515 (OrthoFinder) Phylogenetic Tree(s): OG0003515_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_02G06010.1
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000615.75 tig00000615_g2605.t1 Protein degradation.26S proteasome.regulatory... 0.12 OrthoFinder
Cre13.g581450 30784003, RPN7 Protein degradation.26S proteasome.regulatory... 0.28 OrthoFinder
Cz08g26110.t1 No alias 26S proteasome regulatory subunit Rpn7/COP9 signalosome... 0.11 OrthoFinder
EOD23564 No alias 26S proteasome regulatory subunit Rpn7/COP9 signalosome... 0.09 OrthoFinder
EOD33243 No alias 26S proteasome regulatory subunit Rpn7/COP9 signalosome... 0.06 OrthoFinder
OT_09G02120.1 No alias Proteasome component (PCI) domain; 26S proteasome... 0.05 OrthoFinder
Sro2134_g315960.1 Contig2353.g19341 ATPase regulatory subunit 6 0.31 OrthoFinder
TP05G01650.1 No alias Proteasome component (PCI) domain; 26S proteasome... 0.2 OrthoFinder
Transcript_contig_89237 89237 Proteasome component (PCI) domain; 26S proteasome... 0.03 OrthoFinder
Vocar.0001s0077.1 32885006 26S proteasome regulatory subunit Rpn7/COP9 signalosome... 0.02 OrthoFinder
XM_002508764.1 MICPUN_109050, 109050 Proteasome component (PCI) domain; 26S proteasome... 0.09 OrthoFinder
XM_003056762.1 MicpuC2_44063, 44063 26S proteasome regulatory subunit Rpn7/COP9 signalosome... 0.05 OrthoFinder
lcl|BLLF01001077.1_cds_GFH16965.1_11442 HaLaN_13491, GFH16965 PCI domain-containing protein 0.06 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60726.1_4407 PRW60726 26S proteasome non-ATPase regulatory subunit 6-like protein 0.06 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496364.1_93 KAA8496364 26S proteasome non-ATPase regulatory subunit 6-like 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
CC GO:0000502 proteasome complex IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
CC GO:0008537 proteasome activator complex IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009894 regulation of catabolic process IEP Enrichment
BP GO:0010498 proteasomal protein catabolic process IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
BP GO:0016567 protein ubiquitination IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0031072 heat shock protein binding IEP Enrichment
BP GO:0032446 protein modification by small protein conjugation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042176 regulation of protein catabolic process IEP Enrichment
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Enrichment
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
MF GO:0061630 ubiquitin protein ligase activity IEP Enrichment
MF GO:0061659 ubiquitin-like protein ligase activity IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR019585 Rpn7/CSN1 106 276
IPR000717 PCI_dom 294 395
No external refs found!