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  5. PTI_02G05960.1

PTI_02G05960.1


Description : Vacuolar protein sorting-associated protein 13, second N-terminal domain; Vacuolar protein sorting-associated protein 13, N-terminal domain; VPS13, repeated coiled region [Interproscan].


Gene families : OG_01_0010565 (OrthoFinder) Phylogenetic Tree(s): OG0010565_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_02G05960.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
Sro11_g008890.1 Contig724.g8363 Putative vacuolar protein sorting-associated protein 13A 0.06 OrthoFinder
TP17G01590.1 No alias Vacuolar protein sorting-associated protein 13, second... 0.02 OrthoFinder
TP17G01780.1 No alias Vacuolar protein sorting-associated protein 13, second... 0.06 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
InterPro domains Description Start Stop
IPR031646 VPS13_N2 172 401
IPR026854 VPS13-like_N 6 128
IPR031642 VPS13_mid_rpt 711 870
No external refs found!