Cpa|evm.model.tig00000203.25 (tig00000203_g17130.t1)

Aliases : tig00000203_g17130.t1

Description : DNA-directed RNA polymerase I subunit 1 OS=Arabidopsis thaliana

Gene families : OG_01_0002297 (OrthoFinder) Phylogenetic Tree(s): OG0002297_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00000203.25
Cluster	HCCA: Cluster_95

Target	Alias	Description	ECC score	Gene Family Method
Cre12.g529600	30792110	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.05	OrthoFinder
Cz05g31150.t1	No alias	RNA polymerase Rpb1, domain 4; RNA polymerase, alpha...	0.05	OrthoFinder
EOD22189	No alias	RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,...	0.03	OrthoFinder
OT_14G01020.1	No alias	RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,...	0.02	OrthoFinder
PTI_00G04260.1	No alias	RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,...	0.02	OrthoFinder
Sro258_g101130.1	Contig315.g4199	DNA-directed RNA polymerase subunit beta' (Fragment)	0.01	OrthoFinder
TP06G00570.1	No alias	RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1,...	0.02	OrthoFinder
XM_002505754.1	MICPUN_65110, 65110	RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,...	0.02	OrthoFinder
lcl\|BLLF01001934.1_cds_GFH21938.1_16415	HaLaN_19327, GFH21938	DNA-directed RNA polymerase subunit	0.02	OrthoFinder
lcl\|LHPG02000006.1_cds_PRW58030.1_8585	PRW58030	DNA-directed RNA polymerase I complex large subunit Nuc1...	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003724	RNA helicase activity	IEP	Enrichment
MF	GO:0004386	helicase activity	IEP	Enrichment
MF	GO:0004637	phosphoribosylamine-glycine ligase activity	IEP	Enrichment
BP	GO:0006144	purine nucleobase metabolic process	IEP	Enrichment
BP	GO:0006364	rRNA processing	IEP	Enrichment
BP	GO:0006396	RNA processing	IEP	Enrichment
BP	GO:0006400	tRNA modification	IEP	Enrichment
BP	GO:0008033	tRNA processing	IEP	Enrichment
MF	GO:0008094	ATPase, acting on DNA	IEP	Enrichment
MF	GO:0008168	methyltransferase activity	IEP	Enrichment
BP	GO:0009112	nucleobase metabolic process	IEP	Enrichment
BP	GO:0009113	purine nucleobase biosynthetic process	IEP	Enrichment
BP	GO:0016072	rRNA metabolic process	IEP	Enrichment
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Enrichment
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Enrichment
BP	GO:0032259	methylation	IEP	Enrichment
BP	GO:0034470	ncRNA processing	IEP	Enrichment
BP	GO:0034660	ncRNA metabolic process	IEP	Enrichment
BP	GO:0042440	pigment metabolic process	IEP	Enrichment
BP	GO:0046112	nucleobase biosynthetic process	IEP	Enrichment
BP	GO:0046148	pigment biosynthetic process	IEP	Enrichment
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Enrichment
BP	GO:0072521	purine-containing compound metabolic process	IEP	Enrichment
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000722	RNA_pol_asu	444	628
IPR007083	RNA_pol_Rpb1_4	815	905
IPR007080	RNA_pol_Rpb1_1	9	371
IPR007066	RNA_pol_Rpb1_3	682	737
IPR007081	RNA_pol_Rpb1_5	912	1571

External Links

No external refs found!

Cpa|evm.model.tig00000203.25 (tig00000203_g17130.t1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation