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  5. PTI_01G11550.1

PTI_01G11550.1


Description : WD40 repeat [Interproscan].


Gene families : OG_01_0002464 (OrthoFinder) Phylogenetic Tree(s): OG0002464_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_01G11550.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021179.21 tig00021179_g19236.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 OrthoFinder
Cre06.g278175 30779333 Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 OrthoFinder
Cz09g19070.t1 No alias Hypothetical protein 0.03 OrthoFinder
Cz09g19080.t1 No alias WD40 repeat [Interproscan]. 0.19 OrthoFinder
Dusal.0191s00014.1 33186458 WD40 repeat [Interproscan]. 0.03 OrthoFinder
Dusal.0191s00015.1 33186453 WD40 repeat [Interproscan]. 0.02 OrthoFinder
OT_07G01850.1 No alias WD40 repeat [Interproscan]. 0.2 OrthoFinder
Sro382_g131180.1 Contig4152.g31702 SnoRNP-associated protein-like EMB2271 0.2 OrthoFinder
TP04G04770.1 No alias WD40 repeat [Interproscan]. 0.16 OrthoFinder
Transcript_contig_3007 3007 Hypothetical protein 0.05 OrthoFinder
Vocar.0002s0249.1 32891153 WD40 repeat [Interproscan]. 0.04 OrthoFinder
XM_002503879.1 MICPUN_60028, 60028 U3 snornp-associated-like WD40 repeat-containing protein 0.18 OrthoFinder
XM_003054970.1 MicpuC2_50325, 50325 U3 snornp-associated-like WD40 repeat-containing protein 0.1 OrthoFinder
lcl|BLLF01002100.1_cds_GFH22687.1_17164 HaLaN_20193, GFH22687 WD40 repeat [Interproscan]. 0.06 OrthoFinder
lcl|LHPG02000021.1_cds_PRW20874.1_5038 PRW20874 U3 small nucleolar RNA-interacting 2 0.2 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498077.1_7030 KAA8498077 U3 snoRNP-associated protein-like YAOH 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003883 CTP synthase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Enrichment
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 421 453
IPR001680 WD40_repeat 289 325
IPR001680 WD40_repeat 256 281
IPR001680 WD40_repeat 191 226
No external refs found!