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  5. PTI_01G07120.1

PTI_01G07120.1


Description : Histone deacetylase domain [Interproscan].


Gene families : OG_01_0000214 (OrthoFinder) Phylogenetic Tree(s): OG0000214_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_01G07120.1
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000002.1_cds_KAA8496514.1_243 KAA8496514 Hypothetical protein 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
CC GO:0000782 telomere cap complex IEP Enrichment
CC GO:0000783 nuclear telomere cap complex IEP Enrichment
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
CC GO:1990879 CST complex IEP Enrichment
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 75 398
No external refs found!