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  5. PTI_01G03580.1

PTI_01G03580.1


Description : Ribonuclease, PIN domain; Nin one binding (NOB1) Zn-ribbon-like [Interproscan].


Gene families : OG_01_0002649 (OrthoFinder) Phylogenetic Tree(s): OG0002649_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_01G03580.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020964.11 tig00020964_g16782.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder
Cre01.g031750 30788745 Protein biosynthesis.cytosolic ribosome.small subunit... 0.24 OrthoFinder
Cz06g29250.t1 No alias Ribonuclease, PIN domain [Interproscan]. 0.14 OrthoFinder
Cz06g30010.t1 No alias Nin one binding (NOB1) Zn-ribbon-like [Interproscan]. 0.06 OrthoFinder
Dusal.0174s00012.1 33196262 Ribonuclease, PIN domain; Nin one binding (NOB1)... 0.05 OrthoFinder
EOD32208 No alias Ribonuclease, PIN domain; Nin one binding (NOB1)... 0.24 OrthoFinder
OT_06G04030.1 No alias Ribonuclease, PIN domain; Nin one binding (NOB1)... 0.18 OrthoFinder
Sro400_g135140.1 Contig1256.g11757 20S-pre-rRNA D-site endonuclease NOB1 0.32 OrthoFinder
TP07G06410.1 No alias Nin one binding (NOB1) Zn-ribbon-like; Ribonuclease, PIN... 0.19 OrthoFinder
Transcript_contig_89518 89518 Ribonuclease, PIN domain; Nin one binding (NOB1)... 0.07 OrthoFinder
Vocar.0001s0959.1 32884273 Ribonuclease, PIN domain; Nin one binding (NOB1)... 0.06 OrthoFinder
XM_002508093.1 MICPUN_60565, 60565 Ribonuclease, PIN domain; Nin one binding (NOB1)... 0.14 OrthoFinder
XM_003061944.1 MicpuC2_3608, 3608 Nin one binding (NOB1) Zn-ribbon-like [Interproscan]. 0.13 OrthoFinder
lcl|BLLF01000175.1_cds_GFH08649.1_3126 HaLaN_03641, GFH08649 Nin one binding (NOB1) Zn-ribbon-like [Interproscan]. 0.04 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33098.1_3423 PRW33098 20S-pre-rRNA D-site endonuclease nob1-like 0.18 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493449.1_9750 KAA8493449 20S-pre-rRNA D-site endonuclease nob1 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0036265 RNA (guanine-N7)-methylation IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR033411 Ribonuclease_PIN 37 126
IPR014881 NOB1_Zn-bd 528 606
No external refs found!