PTI_01G01480.1

Description : Integrase, catalytic core; Reverse transcriptase, RNA-dependent DNA polymerase; Zinc finger, CCHC-type [Interproscan].

Gene families : OG_01_0004731 (OrthoFinder) Phylogenetic Tree(s): OG0004731_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: PTI_01G01480.1
Cluster	HCCA: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
PTI_00G00610.1	No alias	Zinc finger, CCHC-type [Interproscan].	0.15	OrthoFinder
PTI_01G08460.1	No alias	Hypothetical protein	0.07	OrthoFinder
PTI_01G08470.1	No alias	Hypothetical protein	0.08	OrthoFinder
PTI_02G02120.1	No alias	Hypothetical protein	0.15	OrthoFinder
PTI_03G01790.1	No alias	Zinc finger, CCHC-type [Interproscan].	0.2	OrthoFinder
PTI_07G01100.1	No alias	Zinc finger, CCHC-type [Interproscan].	0.17	OrthoFinder
PTI_15G01640.1	No alias	Zinc finger, CCHC-type [Interproscan].	0.08	OrthoFinder
PTI_18G00080.1	No alias	Zinc finger, CCHC-type [Interproscan].	0.15	OrthoFinder
PTI_28G00010.1	No alias	Zinc finger, CCHC-type [Interproscan].	0.17	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	557	671
IPR013103	RVT_2	944	1193
IPR001878	Znf_CCHC	308	323

External Links

No external refs found!