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  5. PTI_00G03100.1

PTI_00G03100.1


Description : DNA-directed DNA polymerase, family B, exonuclease domain; DNA-directed DNA polymerase, family B, multifunctional domain; Zinc finger, DNA-directed DNA polymerase, family B, alpha; DNA polymerase alpha catalytic subunit, N-terminal domain [Interproscan].


Gene families : OG_01_0002710 (OrthoFinder) Phylogenetic Tree(s): OG0002710_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_00G03100.1
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000237.42 tig00000237_g20491.t1 Cell cycle.interphase.DNA replication.elongation.DNA... 0.06 OrthoFinder
Cre04.g214350 30791491 Cell cycle.interphase.DNA replication.elongation.DNA... 0.09 OrthoFinder
Cz12g08090.t1 No alias DNA-directed DNA polymerase, family B, multifunctional... 0.05 OrthoFinder
EOD27476 No alias DNA polymerase alpha subunit 1 [Ensembl]. 0.08 OrthoFinder
OT_08G00710.1 No alias DNA polymerase alpha catalytic subunit, N-terminal... 0.13 OrthoFinder
Sro49_g028720.1 Contig2054.g17622 DNA polymerase alpha catalytic subunit (Fragment) 0.2 OrthoFinder
Transcript_contig_54971 54971 DNA-directed DNA polymerase, family B, exonuclease... 0.07 OrthoFinder
Vocar.0025s0165.1 32898389 DNA-directed DNA polymerase, family B, multifunctional... 0.04 OrthoFinder
XM_002502979.1 MICPUN_59630, 59630 Zinc finger, DNA-directed DNA polymerase, family B,... 0.09 OrthoFinder
lcl|BLLF01000259.1_cds_GFH09747.1_4224 HaLaN_04946, GFH09747 DNA polymerase 0.03 OrthoFinder
lcl|BLLF01000259.1_cds_GFH09748.1_4225 HaLaN_04947, GFH09748 DNA-directed DNA polymerase, family B, exonuclease... 0.04 OrthoFinder
lcl|BLLF01000259.1_cds_GFH09749.1_4226 HaLaN_04948, GFH09749 DNA polymerase 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW60975.1_176 PRW60975 DNA polymerase alpha catalytic subunit 0.04 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490764.1_6020 KAA8490764 DNA polymerase alpha catalytic subunit 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003887 DNA-directed DNA polymerase activity IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0004421 hydroxymethylglutaryl-CoA synthase activity IEP Enrichment
MF GO:0004576 oligosaccharyl transferase activity IEP Enrichment
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006333 chromatin assembly or disassembly IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0008156 negative regulation of DNA replication IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
BP GO:0009890 negative regulation of biosynthetic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016758 hexosyltransferase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0031324 negative regulation of cellular metabolic process IEP Enrichment
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0045005 DNA-dependent DNA replication maintenance of fidelity IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0048478 replication fork protection IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0090329 regulation of DNA-dependent DNA replication IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP Enrichment
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR015088 Znf_DNA-dir_DNA_pol_B_alpha 1338 1530
IPR006133 DNA-dir_DNA_pol_B_exonuc 436 792
IPR006134 DNA-dir_DNA_pol_B_multi_dom 857 1296
IPR024647 DNA_pol_a_cat_su_N 12 74
No external refs found!