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  5. OT_18G00170.1

OT_18G00170.1


Description : E3 ligase, CCCH-type zinc finger; RNA-binding, Nab2-type zinc finger; Zinc finger, CCCH-type; K Homology domain, type 1 [Interproscan].


Gene families : OG_01_0000404 (OrthoFinder) Phylogenetic Tree(s): OG0000404_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_18G00170.1
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000319.24 tig00000319_g24137.t1 No description available 0.01 OrthoFinder
EOD30116 No alias Zinc finger, CCCH-type [Interproscan]. 0.02 OrthoFinder
Vocar.0097s0008.1 32888356 Zinc finger, CCCH-type [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003873 6-phosphofructo-2-kinase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004788 thiamine diphosphokinase activity IEP Enrichment
MF GO:0004814 arginine-tRNA ligase activity IEP Enrichment
CC GO:0005956 protein kinase CK2 complex IEP Enrichment
BP GO:0005996 monosaccharide metabolic process IEP Enrichment
BP GO:0006000 fructose metabolic process IEP Enrichment
BP GO:0006420 arginyl-tRNA aminoacylation IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
MF GO:0008443 phosphofructokinase activity IEP Enrichment
BP GO:0009229 thiamine diphosphate biosynthetic process IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0019200 carbohydrate kinase activity IEP Enrichment
MF GO:0019207 kinase regulator activity IEP Enrichment
BP GO:0019318 hexose metabolic process IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0019887 protein kinase regulator activity IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
MF GO:0030975 thiamine binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0042357 thiamine diphosphate metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0097526 spliceosomal tri-snRNP complex IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 226 252
IPR004088 KH_dom_type_1 137 199
IPR041367 Znf-CCCH_4 83 104
No external refs found!