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  5. OT_17G01420.1

OT_17G01420.1


Description : Ribosomal protein S5, C-terminal; Ribosomal protein S5, N-terminal [Interproscan].


Gene families : OG_01_0002382 (OrthoFinder) Phylogenetic Tree(s): OG0002382_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_17G01420.1
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020961.135 tig00020961_g16755.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 OrthoFinder
Cre01.g039250 30788560, RPS2 Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 OrthoFinder
Cz06g19150.t1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.12 OrthoFinder
Dusal.0108s00005.1 33189508 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.14 OrthoFinder
EOD22582 No alias Ribosomal protein S5, C-terminal [Interproscan]. 0.04 OrthoFinder
PTI_17G01720.1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.35 OrthoFinder
Sro693_g188270.1 Contig3212.g25392 40S ribosomal protein S2 (Fragment) 0.4 OrthoFinder
TP10G03790.1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.07 OrthoFinder
Transcript_contig_79122 79122 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.03 OrthoFinder
Vocar.0001s0807.1 32884773 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.05 OrthoFinder
XM_002502219.1 MICPUN_90856, 90856 Ribosomal protein S5, N-terminal; Ribosomal protein S5,... 0.14 OrthoFinder
XM_003063973.1 MicpuC2_49763, 49763 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.16 OrthoFinder
lcl|BLLF01000722.1_cds_GFH14405.1_8882 HaLaN_10454, GFH14405 Component of cytosolic 80S ribosome and 40S small subunit 0.02 OrthoFinder
lcl|BLLF01001424.1_cds_GFH19209.1_13686 HaLaN_16121, GFH19209 Component of cytosolic 80S ribosome and 40S small subunit 0.03 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60442.1_4146 PRW60442 40S ribosomal S2-4 0.01 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39136.1_2764 PRW39136 40S ribosomal S2-4 0.17 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497763.1_6716 KAA8497763 40S ribosomal protein S2 0.18 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004107 chorismate synthase activity IEP Enrichment
MF GO:0004619 phosphoglycerate mutase activity IEP Enrichment
MF GO:0004779 sulfate adenylyltransferase activity IEP Enrichment
MF GO:0004781 sulfate adenylyltransferase (ATP) activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004813 alanine-tRNA ligase activity IEP Enrichment
MF GO:0004827 proline-tRNA ligase activity IEP Enrichment
MF GO:0004832 valine-tRNA ligase activity IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0005996 monosaccharide metabolic process IEP Enrichment
BP GO:0006006 glucose metabolic process IEP Enrichment
BP GO:0006007 glucose catabolic process IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006419 alanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006433 prolyl-tRNA aminoacylation IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0019318 hexose metabolic process IEP Enrichment
BP GO:0019320 hexose catabolic process IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
BP GO:0046365 monosaccharide catabolic process IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
InterPro domains Description Start Stop
IPR005324 Ribosomal_S5_C 173 244
IPR013810 Ribosomal_S5_N 90 154
No external refs found!