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  5. OT_15G01990.1

OT_15G01990.1


Description : Zinc finger, PHD-finger; Zinc finger, RING-type [Interproscan].


Gene families : OG_01_0004961 (OrthoFinder) Phylogenetic Tree(s): OG0004961_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_15G01990.1
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Cz08g02060.t1 No alias Zinc finger, C3HC4 RING-type; Zinc finger, PHD-finger... 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0004109 coproporphyrinogen oxidase activity IEP Enrichment
CC GO:0005685 U1 snRNP IEP Enrichment
BP GO:0006376 mRNA splice site selection IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
MF GO:0008171 O-methyltransferase activity IEP Enrichment
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Enrichment
BP GO:0015693 magnesium ion transport IEP Enrichment
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
MF GO:0046873 metal ion transmembrane transporter activity IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
InterPro domains Description Start Stop
IPR001841 Znf_RING 11 51
IPR019787 Znf_PHD-finger 98 142
No external refs found!