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  5. OT_14G03060.1

OT_14G03060.1


Description : Tetratricopeptide repeat; PRP1 splicing factor, N-terminal [Interproscan].


Gene families : OG_01_0001986 (OrthoFinder) Phylogenetic Tree(s): OG0001986_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_14G03060.1
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
Cre14.g633650 30776534, PRP6 RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder
Sro987_g228260.1 Contig1137.g10933 mRNA-processing factor 6 0.02 OrthoFinder
Transcript_contig_56067 56067 PRP1 splicing factor, N-terminal [Interproscan]. 0.02 OrthoFinder
Vocar.0022s0221.1 32891963 PRP1 splicing factor, N-terminal; Tetratricopeptide... 0.03 OrthoFinder
XM_002505345.1 MICPUN_63388, 63388 MRNA splicing protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
CC GO:0005685 U1 snRNP IEP Enrichment
BP GO:0006376 mRNA splice site selection IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
InterPro domains Description Start Stop
IPR010491 PRP1_N 18 150
No external refs found!