1. Home
  2. Species
  3. Ostreococcus tauri
  4. Sequence
  5. OT_14G00340.1

OT_14G00340.1


Description : Pre-mRNA processing factor 4 (PRP4)-like; WD40 repeat [Interproscan].


Gene families : OG_01_0003148 (OrthoFinder) Phylogenetic Tree(s): OG0003148_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_14G00340.1
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
Cz03g40300.t1 No alias Pre-mRNA processing factor 4 (PRP4)-like [Interproscan]. 0.03 OrthoFinder
EOD03876 No alias WD40 repeat [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000028.1_cds_PRW05847.1_6039 PRW05847 U4 U6 small nuclear ribonucleo PRP4 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP Enrichment
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004526 ribonuclease P activity IEP Enrichment
MF GO:0004549 tRNA-specific ribonuclease activity IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006188 IMP biosynthetic process IEP Enrichment
BP GO:0006189 'de novo' IMP biosynthetic process IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0009123 nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030686 90S preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0046040 IMP metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 334 366
IPR001680 WD40_repeat 292 323
IPR001680 WD40_repeat 421 453
IPR001680 WD40_repeat 372 406
IPR014906 PRP4-like 34 59
No external refs found!