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  5. OT_13G00120.1

OT_13G00120.1


Description : TOPRIM domain; DNA topoisomerase, type IIA, subunit B, domain 2; DNA topoisomerase, type IIA, subunit A/C-terminal; Histidine kinase/HSP90-like ATPase; C-terminal associated domain of TOPRIM [Interproscan].


Gene families : OG_01_0001339 (OrthoFinder) Phylogenetic Tree(s): OG0001339_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_13G00120.1
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021432.55 tig00021432_g21247.t1 DNA topoisomerase 2 OS=Pisum sativum 0.09 OrthoFinder
Cpa|evm.model.tig00021433.2 tig00021433_g21256.t1 DNA topoisomerase 2 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre01.g009250 30789357, TOP2 Cell cycle.interphase.DNA replication.preinitiation.TOP2... 0.05 OrthoFinder
Cz11g19140.t1 No alias DNA topoisomerase, type IIA, subunit B, domain 2; TOPRIM... 0.06 OrthoFinder
Dusal.0487s00005.1 33203263 Histidine kinase/HSP90-like ATPase; C-terminal... 0.05 OrthoFinder
EOD17812 No alias Putative DNA topoisomerase II [Ensembl]. 0.03 OrthoFinder
EOD22469 No alias DNA topoisomerase, type IIA, subunit A/C-terminal; DNA... 0.07 OrthoFinder
PTI_12G02730.1 No alias TOPRIM domain; DNA topoisomerase, type IIA, subunit... 0.06 OrthoFinder
Sro150_g068880.1 Contig1519.g13851 DNA topoisomerase 2 top-2 0.07 OrthoFinder
Sro2738_g335950.1 Contig3767.g28935 DNA topoisomerase 2 top-2 0.03 OrthoFinder
SymbC1.scaffold1232.13 1232.13 C-terminal associated domain of TOPRIM; DNA... 0.01 OrthoFinder
TP10G02490.1 No alias DNA topoisomerase, type IIA, subunit A/C-terminal;... 0.03 OrthoFinder
TP10G02750.1 No alias DNA topoisomerase, type IIA, subunit A/C-terminal;... 0.02 OrthoFinder
Vocar.0024s0199.1 32890400 Histidine kinase/HSP90-like ATPase; TOPRIM domain; DNA... 0.05 OrthoFinder
XM_002501981.1 MICPUN_58377, 58377 DNA topoisomerase, type IIA, subunit A/C-terminal; DNA... 0.12 OrthoFinder
XM_003057460.1 MicpuC2_46870, 46870 TOPRIM domain; DNA topoisomerase, type IIA, subunit... 0.07 OrthoFinder
lcl|BLLF01001294.1_cds_GFH18390.1_12867 HaLaN_15188, GFH18390 DNA topoisomerase 2 0.01 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58281.1_7787 PRW58281 DNA topoisomerase 2 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497819.1_6772 KAA8497819 DNA topoisomerase 2 0.07 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492722.1_2458 KAA8492722 DNA topoisomerase 2 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000796 condensin complex IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005507 copper ion binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006323 DNA packaging IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0007076 mitotic chromosome condensation IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019207 kinase regulator activity IEP Enrichment
MF GO:0019887 protein kinase regulator activity IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
BP GO:0030261 chromosome condensation IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
InterPro domains Description Start Stop
IPR013506 Topo_IIA_bsu_dom2 294 449
IPR031660 TOPRIM_C 594 719
IPR006171 TOPRIM_domain 480 578
IPR003594 HATPase_C 104 249
IPR002205 Topo_IIA_A/C 722 1172
No external refs found!