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  5. OT_09G03930.1

OT_09G03930.1


Description : Helicase, C-terminal; DNA-directed DNA polymerase, family A, palm domain; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000615 (OrthoFinder) Phylogenetic Tree(s): OG0000615_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_09G03930.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000789.15 tig00000789_g4108.t1 Helicase and polymerase-containing protein TEBICHI... 0.01 OrthoFinder
Cre08.g384390 30774104 Helicase and polymerase-containing protein TEBICHI... 0.05 OrthoFinder
Cre16.g664301 30777592 DNA damage response.DNA repair polymerase activities.DNA... 0.02 OrthoFinder
Cz13g19210.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Dusal.1332s00001.1 33199788 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Dusal.1958s00001.1 33200522 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
EOD27749 No alias Putative DNA repair POLQ protein [Ensembl]. 0.02 OrthoFinder
EOD35962 No alias DNA polymerase v [Ensembl]. 0.04 OrthoFinder
Transcript_contig_64488 64488 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder
XM_003055308.1 MicpuC2_49885, 49885 Helicase/polymerase domain-containing protein 0.03 OrthoFinder
lcl|BLLF01000789.1_cds_GFH14972.1_9449 HaLaN_11116, GFH14972 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003887 DNA-directed DNA polymerase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000725 recombinational repair IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0003964 RNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0009187 cyclic nucleotide metabolic process IEP Enrichment
BP GO:0009190 cyclic nucleotide biosynthetic process IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
MF GO:0043138 3'-5' DNA helicase activity IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001098 DNA-dir_DNA_pol_A_palm_dom 1259 1636
IPR001650 Helicase_C 412 560
IPR011545 DEAD/DEAH_box_helicase_dom 163 303
No external refs found!