OT_07G01210.1


Description : Fibrillarin [Interproscan].


Gene families : OG_01_0002387 (OrthoFinder) Phylogenetic Tree(s): OG0002387_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_07G01210.1
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001049.16 tig00001049_g6665.t1 RNA processing.RNA modification.rRNA/tRNA... 0.02 OrthoFinder
Cre02.g077300 30785723, NOP1 RNA processing.RNA modification.rRNA/tRNA... 0.05 OrthoFinder
Cz10g07040.t1 No alias Fibrillarin [Interproscan]. 0.05 OrthoFinder
Sro1226_g254200.1 Contig1389.g12811 RRNA 2'-O-methyltransferase fibrillarin 0.03 OrthoFinder
Transcript_contig_54582 54582 Fibrillarin [Interproscan]. 0.02 OrthoFinder
Vocar.0030s0076.1 32894520 Fibrillarin [Interproscan]. 0.03 OrthoFinder
XM_002499943.1 MICPUN_97046, 97046 Fibrillarin [Interproscan]. 0.04 OrthoFinder
XM_003055126.1 MicpuC2_61688, 61688 Fibrillarin [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01000026.1_cds_GFH06193.1_670 HaLaN_00783, GFH06193 Fibrillarin [Interproscan]. 0.05 OrthoFinder
lcl|BLLF01000255.1_cds_GFH09702.1_4179 HaLaN_04892, GFH09702 Mediator of RNA polymerase II transcription subunit 36a 0.05 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59290.1_6872 PRW59290 RRNA 2-O-methyltransferase fibrillarin 0.05 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491508.1_6318 KAA8491508 Putative mediator of RNA polymerase II transcription subunit 36b 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0018205 peptidyl-lysine modification IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000692 Fibrillarin 76 302
No external refs found!