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  5. OT_06G02830.1

OT_06G02830.1


Description : Helicase-associated domain; Helicase, C-terminal; Domain of unknown function DUF1605; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000129 (OrthoFinder) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: OT_06G02830.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000786.1 tig00000786_g4048.t1 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00021094.26 tig00021094_g18111.t1 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre12.g492450 30792289 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cz19g09190.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.03 OrthoFinder
EOD09087 No alias Helicase, C-terminal; Domain of unknown function... 0.01 OrthoFinder
EOD09487 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.01 OrthoFinder
EOD25315 No alias Helicase, C-terminal; Helicase-associated domain;... 0.02 OrthoFinder
EOD26801 No alias Helicase, C-terminal; Helicase-associated domain [Interproscan]. 0.01 OrthoFinder
Sro152_g069390.1 Contig69.g699 Splicing factor ATP-dependent RNA helicase 0.01 OrthoFinder
Sro944_g222900.1 Contig4161.g31782 Probable ATP-dependent RNA helicase spindle-E 0.02 OrthoFinder
TP05G00340.1 No alias Domain of unknown function DUF1605; Helicase,... 0.02 OrthoFinder
Transcript_contig_55857 55857 Helicase, C-terminal; R3H domain; DEAD/DEAH box helicase... 0.01 OrthoFinder
Transcript_contig_56323 56323 Helicase-associated domain; Domain of unknown function... 0.01 OrthoFinder
Vocar.0034s0085.1 32893086 Helicase-associated domain; RWD domain; Domain of... 0.02 OrthoFinder
XM_002500677.1 MICPUN_65643, 65643 Helicase, C-terminal; Helicase-associated domain;... 0.03 OrthoFinder
XM_002505666.1 MICPUN_63531, 63531 Helicase, C-terminal; Helicase-associated domain;... 0.02 OrthoFinder
XM_002506085.1 MICPUN_71905, 71905 Domain of unknown function DUF1605 [Interproscan]. 0.03 OrthoFinder
XM_002506086.1 MICPUN_88188, 88188 Helicase, C-terminal; Helicase-associated domain;... 0.02 OrthoFinder
XM_002509211.1 MICPUN_98164, 98164 Helicase, C-terminal; Helicase-associated domain;... 0.02 OrthoFinder
XM_003056713.1 MicpuC2_697, 697 Helicase, C-terminal; Helicase-associated domain; Domain... 0.04 OrthoFinder
XM_003064367.1 MicpuC2_43509, 43509 Helicase, C-terminal; Helicase-associated domain; Domain... 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498481.1_7434 KAA8498481 DExH-box ATP-dependent RNA helicase DExH1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0004356 glutamate-ammonia ligase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006820 anion transport IEP Enrichment
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Enrichment
BP GO:0015689 molybdate ion transport IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016151 nickel cation binding IEP Enrichment
MF GO:0016211 ammonia ligase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
BP GO:0019627 urea metabolic process IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
MF GO:0030976 thiamine pyrophosphate binding IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0031369 translation initiation factor binding IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043419 urea catabolic process IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0043605 cellular amide catabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
BP GO:0071941 nitrogen cycle metabolic process IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 894 1023
IPR011709 DUF1605 1271 1359
IPR011545 DEAD/DEAH_box_helicase_dom 613 769
IPR007502 Helicase-assoc_dom 1089 1185
No external refs found!