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  5. OT_06G02660.1

OT_06G02660.1


Description : DNA mismatch repair protein MutS, connector domain; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, clamp [Interproscan].


Gene families : OG_01_0000301 (OrthoFinder) Phylogenetic Tree(s): OG0000301_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_06G02660.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000489.16 tig00000489_g1375.t1 DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cpa|evm.model.tig00021616.10 tig00021616_g22915.t1 DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana 0.05 OrthoFinder
Cre05.g235750 30783291, MSH6 DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana 0.11 OrthoFinder
Cre09.g397845 30781329 DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana 0.06 OrthoFinder
Cz04g14260.t1 No alias DNA mismatch repair protein MutS, connector domain; DNA... 0.12 OrthoFinder
Dusal.0149s00005.1 33186635 DNA mismatch repair protein MutS, connector domain; DNA... 0.04 OrthoFinder
EOD36720 No alias DNA mismatch repair protein MutS, connector domain; DNA... 0.09 OrthoFinder
PTI_01G03680.1 No alias DNA mismatch repair protein MutS, core; DNA mismatch... 0.06 OrthoFinder
Sro1192_g251010.1 Contig331.g4397 Protein MutS 0.05 OrthoFinder
Vocar.0003s0463.1 32889088 DNA mismatch repair protein MutS, C-terminal; DNA... 0.07 OrthoFinder
XM_002508776.1 MICPUN_62040, 62040 DNA mismatch repair protein MutS-like, N-terminal; DNA... 0.04 OrthoFinder
XM_003059453.1 MicpuC2_40215, 40215 DNA mismatch repair protein MutS, core; DNA mismatch... 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Enrichment
BP GO:0000724 double-strand break repair via homologous recombination IEP Enrichment
BP GO:0000725 recombinational repair IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006887 exocytosis IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007062 sister chromatid cohesion IEP Enrichment
BP GO:0007064 mitotic sister chromatid cohesion IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
InterPro domains Description Start Stop
IPR000432 DNA_mismatch_repair_MutS_C 956 1152
IPR007695 DNA_mismatch_repair_MutS-lik_N 255 369
IPR007696 DNA_mismatch_repair_MutS_core 562 893
IPR007860 DNA_mmatch_repair_MutS_con_dom 381 522
IPR007861 DNA_mismatch_repair_MutS_clamp 760 852
No external refs found!