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  5. OT_03G05510.1

OT_03G05510.1


Description : Strawberry notch, helicase C domain; Strawberry notch, AAA domain [Interproscan].


Gene families : OG_01_0000467 (OrthoFinder) Phylogenetic Tree(s): OG0000467_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_03G05510.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Cre01.g053250 30789240 Protein FORGETTER 1 OS=Arabidopsis thaliana 0.07 OrthoFinder
Cre07.g350100 30774786 Protein FORGETTER 1 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cre13.g578501 30784198 Protein FORGETTER 1 OS=Arabidopsis thaliana 0.07 OrthoFinder
Cz04g33080.t1 No alias Strawberry notch, helicase C domain; Strawberry notch,... 0.02 OrthoFinder
Cz08g14040.t1 No alias Strawberry notch, helicase C domain;... 0.02 OrthoFinder
Cz08g29260.t1 No alias Strawberry notch, helicase C domain; Zinc finger,... 0.02 OrthoFinder
Dusal.0166s00009.1 33188727 Strawberry notch, AAA domain [Interproscan]. 0.03 OrthoFinder
EOD07809 No alias Strawberry notch, AAA domain; Strawberry notch, helicase... 0.03 OrthoFinder
EOD10242 No alias Strawberry notch, AAA domain; Strawberry notch, helicase... 0.06 OrthoFinder
EOD16011 No alias Strawberry notch, helicase C domain [Interproscan]. 0.09 OrthoFinder
EOD16012 No alias Strawberry notch, AAA domain [Interproscan]. 0.07 OrthoFinder
EOD31137 No alias Strawberry notch, AAA domain; Strawberry notch, helicase... 0.02 OrthoFinder
EOD41135 No alias Strawberry notch, AAA domain; Strawberry notch, helicase... 0.05 OrthoFinder
Sro106_g053630.1 Contig1122.g10760 Strawberry notch homolog 2 0.06 OrthoFinder
TP02G01100.1 No alias Strawberry notch, AAA domain; Strawberry notch, helicase... 0.04 OrthoFinder
Transcript_contig_55863 55863 Strawberry notch, helicase C domain; Strawberry notch,... 0.04 OrthoFinder
Vocar.0001s0130.1 32884628 Strawberry notch, AAA domain; Strawberry notch, helicase... 0.05 OrthoFinder
Vocar.0027s0108.1 32887103 Strawberry notch, AAA domain; Strawberry notch, helicase... 0.03 OrthoFinder
lcl|BLLF01001655.1_cds_GFH20545.1_15022 HaLaN_17686, GFH20545 PHD-type domain-containing protein 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000723 telomere maintenance IEP Enrichment
CC GO:0000776 kinetochore IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0003964 RNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010639 negative regulation of organelle organization IEP Enrichment
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
BP GO:0032200 telomere organization IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032780 negative regulation of ATPase activity IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033044 regulation of chromosome organization IEP Enrichment
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0042162 telomeric DNA binding IEP Enrichment
CC GO:0042555 MCM complex IEP Enrichment
MF GO:0043047 single-stranded telomeric DNA binding IEP Enrichment
BP GO:0043086 negative regulation of catalytic activity IEP Enrichment
MF GO:0043138 3'-5' DNA helicase activity IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0043462 regulation of ATPase activity IEP Enrichment
BP GO:0044092 negative regulation of molecular function IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
BP GO:0051095 regulation of helicase activity IEP Enrichment
BP GO:0051097 negative regulation of helicase activity IEP Enrichment
BP GO:0051129 negative regulation of cellular component organization IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
MF GO:0060090 molecular adaptor activity IEP Enrichment
BP GO:0060249 anatomical structure homeostasis IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
MF GO:0098847 sequence-specific single stranded DNA binding IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
BP GO:1905462 regulation of DNA duplex unwinding IEP Enrichment
BP GO:1905463 negative regulation of DNA duplex unwinding IEP Enrichment
BP GO:1905774 regulation of DNA helicase activity IEP Enrichment
BP GO:1905775 negative regulation of DNA helicase activity IEP Enrichment
BP GO:2001251 negative regulation of chromosome organization IEP Enrichment
InterPro domains Description Start Stop
IPR026937 SBNO_Helicase_C_dom 893 1175
IPR039187 SNO_AAA 58 373
No external refs found!