OT_03G03280.1


Description : 40S ribosomal protein SA, C-terminal domain; Ribosomal protein S2 [Interproscan].


Gene families : OG_01_0002089 (OrthoFinder) Phylogenetic Tree(s): OG0002089_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_03G03280.1
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Cre10.g432800 30790737, RPSa Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder
Cz04g36090.t1 No alias Ribosomal protein S2 [Interproscan]. 0.07 OrthoFinder
Dusal.0160s00027.1 33188334 Ribosomal protein S2 [Interproscan]. 0.12 OrthoFinder
EOD15394 No alias 40S ribosomal protein SA, C-terminal domain; Ribosomal... 0.07 OrthoFinder
PTI_12G01500.1 No alias Ribosomal protein S2 [Interproscan]. 0.14 OrthoFinder
Sro120_g058380.1 Contig2411.g19716 40S ribosomal protein SA 0.18 OrthoFinder
SymbC1.scaffold3021.4 3021.4 Ribosomal protein S2 [Interproscan]. 0.02 OrthoFinder
TP03G06220.1 No alias Ribosomal protein S2 [Interproscan]. 0.13 OrthoFinder
Transcript_contig_79177 79177 Ribosomal protein S2 [Interproscan]. 0.05 OrthoFinder
Vocar.0008s0458.1 32897164 Ribosomal protein S2 [Interproscan]. 0.03 OrthoFinder
XM_003055196.1 MicpuC2_13384, 13384 Ribosomal protein S2 [Interproscan]. 0.11 OrthoFinder
lcl|LHPG02000015.1_cds_PRW33794.1_3017 PRW33794 40S ribosomal SA-like 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499119.1_8072 KAA8499119 40S ribosomal protein SA 0.11 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0004779 sulfate adenylyltransferase activity IEP Enrichment
MF GO:0004781 sulfate adenylyltransferase (ATP) activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
InterPro domains Description Start Stop
IPR032281 40S_SA_C 199 271
IPR001865 Ribosomal_S2 15 109
IPR001865 Ribosomal_S2 115 179
No external refs found!