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  5. OT_03G02440.1

OT_03G02440.1


Description : RNA recognition motif domain; La-type HTH domain [Interproscan].


Gene families : OG_01_0000377 (OrthoFinder) Phylogenetic Tree(s): OG0000377_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_03G02440.1
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
Cre17.g724200 30781820, LAL1 La protein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz06g07110.t1 No alias La-type HTH domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56866.1_9788 PRW56866 La-related 1A isoform X1 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018205 peptidyl-lysine modification IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030686 90S preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0051604 protein maturation IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR006630 La_HTH 45 92
IPR000504 RRM_dom 151 207
No external refs found!