1. Home
  2. Species
  3. Micromonas pusilla
  4. Sequence
  5. XM_003063796.1

XM_003063796.1 (MicpuC2_36623, 36623)


Aliases : MicpuC2_36623, 36623

Description : RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit [Interproscan].


Gene families : OG_01_0002297 (OrthoFinder) Phylogenetic Tree(s): OG0002297_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003063796.1
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
Cre12.g529600 30792110 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.1 OrthoFinder
Cz05g31150.t1 No alias RNA polymerase Rpb1, domain 4; RNA polymerase, alpha... 0.09 OrthoFinder
Dusal.0073s00015.1 33194603 RNA polymerase Rpb1, domain 1; RNA polymerase, alpha... 0.03 OrthoFinder
EOD22189 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.09 OrthoFinder
OT_14G01020.1 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.07 OrthoFinder
PTI_00G04260.1 No alias RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,... 0.04 OrthoFinder
Sro258_g101130.1 Contig315.g4199 DNA-directed RNA polymerase subunit beta' (Fragment) 0.03 OrthoFinder
TP06G00570.1 No alias RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1,... 0.02 OrthoFinder
Vocar.0037s0083.1 32897652 RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,... 0.03 OrthoFinder
XM_002505754.1 MICPUN_65110, 65110 RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.13 OrthoFinder
lcl|BLLF01001934.1_cds_GFH21937.1_16414 HaLaN_19326, GFH21937 DNA-directed RNA polymerase subunit 0.02 OrthoFinder
lcl|BLLF01001934.1_cds_GFH21938.1_16415 HaLaN_19327, GFH21938 DNA-directed RNA polymerase subunit 0.05 OrthoFinder
lcl|BLLF01002728.1_cds_GFH25131.1_19608 HaLaN_23045, GFH25131 DNA-directed RNA polymerase subunit 0.05 OrthoFinder
lcl|LHPG02000006.1_cds_PRW58030.1_8585 PRW58030 DNA-directed RNA polymerase I complex large subunit Nuc1... 0.05 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8493983.1_3847 KAA8493983 DNA-directed RNA polymerase I subunit rpa1 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003852 2-isopropylmalate synthase activity IEP Enrichment
MF GO:0003855 3-dehydroquinate dehydratase activity IEP Enrichment
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP Enrichment
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006188 IMP biosynthetic process IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006551 leucine metabolic process IEP Enrichment
MF GO:0008519 ammonium transmembrane transporter activity IEP Enrichment
BP GO:0009098 leucine biosynthetic process IEP Enrichment
BP GO:0009123 nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0015696 ammonium transport IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016840 carbon-nitrogen lyase activity IEP Enrichment
MF GO:0016842 amidine-lyase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030991 intraciliary transport particle A IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046040 IMP metabolic process IEP Enrichment
MF GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR007083 RNA_pol_Rpb1_4 885 973
IPR000722 RNA_pol_asu 443 639
IPR007081 RNA_pol_Rpb1_5 980 1597
IPR007066 RNA_pol_Rpb1_3 645 825
IPR007080 RNA_pol_Rpb1_1 18 440
No external refs found!