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  5. XM_003063744.1

XM_003063744.1 (MicpuC2_49747, 49747)


Aliases : MicpuC2_49747, 49747

Description : Ribosomal protein S18 (RPS18)


Gene families : OG_01_0002223 (OrthoFinder) Phylogenetic Tree(s): OG0002223_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003063744.1
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Cre06.g272950 30778811, RPS18 Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 OrthoFinder
Cz03g21050.t1 No alias Ribosomal protein S13 [Interproscan]. 0.05 OrthoFinder
Dusal.0003s00026.1 33187489 Ribosomal protein S13 [Interproscan]. 0.06 OrthoFinder
EOD07550 No alias Ribosomal protein S13 [Interproscan]. 0.09 OrthoFinder
EOD24485 No alias Ribosomal protein S13 [Interproscan]. 0.09 OrthoFinder
OT_14G03080.1 No alias Ribosomal protein S13 [Interproscan]. 0.11 OrthoFinder
PTI_23G01020.1 No alias Ribosomal protein S13 [Interproscan]. 0.17 OrthoFinder
Sro2117_g315240.1 Contig3258.g25694 40S ribosomal protein S18 0.18 OrthoFinder
SymbC1.scaffold24401.1 24401.1 Ribosomal protein S13 [Interproscan]. 0.04 OrthoFinder
TP02G00280.1 No alias Ribosomal protein S13 [Interproscan]. 0.16 OrthoFinder
Vocar.0002s0337.1 32891179 Ribosomal protein S13 [Interproscan]. 0.06 OrthoFinder
XM_002505702.1 MICPUN_109369, 109369 Ribosomal protein S18 (RPS18) 0.16 OrthoFinder
lcl|BLLF01000380.1_cds_GFH11172.1_5649 HaLaN_06628, GFH11172 Ribosomal protein S13 [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56629.1_9755 PRW56629 40S ribosomal S18 0.11 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495014.1_3544 KAA8495014 40S ribosomal protein S18 0.1 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004788 thiamine diphosphokinase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006952 defense response IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0009229 thiamine diphosphate biosynthetic process IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
MF GO:0030975 thiamine binding IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042357 thiamine diphosphate metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 15 143
No external refs found!