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  5. XM_003062879.1

XM_003062879.1 (MicpuC2_6446, 6446)


Aliases : MicpuC2_6446, 6446

Description : Ribosomal protein L3 [Interproscan].


Gene families : OG_01_0000938 (OrthoFinder) Phylogenetic Tree(s): OG0000938_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003062879.1
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Cre01.g022250 30789331, MRPL3 Protein biosynthesis.organelle translation... 0.03 OrthoFinder
Cre48.g761197 30778371 Protein biosynthesis.organelle translation... 0.03 OrthoFinder
Cz04g11050.t1 No alias Hypothetical protein 0.02 OrthoFinder
Cz04g11060.t1 No alias Ribosomal protein L3 [Interproscan]. 0.02 OrthoFinder
Dusal.0108s00003.1 33189525 Ribosomal protein L3 [Interproscan]. 0.05 OrthoFinder
Dusal.0638s00007.1 33201545 Ribosomal protein L3 [Interproscan]. 0.03 OrthoFinder
OT_02G04320.1 No alias Ribosomal protein L3 [Interproscan]. 0.07 OrthoFinder
Sro261_g101740.1 Contig3068.g24446 Protein L3 0.01 OrthoFinder
Sro51_chlor_g029470.1 Rpl3 Rpl3 0.02 OrthoFinder
Transcript_contig_56715 56715 Ribosomal protein L3 [Interproscan]. 0.02 OrthoFinder
XM_002504954.1 MICPUN_62670, 62670 Ribosomal protein L3, chloroplast precursor (RPL3) 0.02 OrthoFinder
lcl|BLLF01001775.1_cds_GFH21186.1_15663 HaLaN_18435, GFH21186 Ribosomal protein L3 [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57537.1_8896 PRW57537 50S ribosomal L3-chloroplastic 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006366 transcription by RNA polymerase II IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006952 defense response IEP Enrichment
BP GO:0007062 sister chromatid cohesion IEP Enrichment
BP GO:0007064 mitotic sister chromatid cohesion IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
CC GO:0031390 Ctf18 RFC-like complex IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
InterPro domains Description Start Stop
IPR000597 Ribosomal_L3 84 172
No external refs found!