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  5. XM_003062266.1

XM_003062266.1 (MicpuC2_49713, 49713)


Aliases : MicpuC2_49713, 49713

Description : Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan].


Gene families : OG_01_0002951 (OrthoFinder) Phylogenetic Tree(s): OG0002951_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003062266.1
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000615.59 tig00000615_g2588.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder
Cre01.g047750 30789695, RPL18a Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 OrthoFinder
Dusal.0268s00002.1 33190613 Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan]. 0.01 OrthoFinder
EOD26288 No alias Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan]. 0.06 OrthoFinder
EOD38969 No alias Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan]. 0.02 OrthoFinder
OT_07G00180.1 No alias Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan]. 0.09 OrthoFinder
PTI_09G04120.1 No alias Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan]. 0.12 OrthoFinder
Sro569_g168300.1 Contig1581.g14356 60S ribosomal protein L18a 0.14 OrthoFinder
TP04G04550.1 No alias Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan]. 0.06 OrthoFinder
UNPLg00655.t1 No alias Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan]. 0.11 OrthoFinder
Vocar.0001s0546.1 32884270 Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan]. 0.04 OrthoFinder
XM_002501183.1 MICPUN_57540, 57540 Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan]. 0.1 OrthoFinder
lcl|BLLF01009296.1_cds_GFH33674.1_28151 HaLaN_33080, GFH33674 60S ribosomal protein L18a-2 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57226.1_9365 PRW57226 60S ribosomal L18a-2 0.08 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495548.1_1546 KAA8495548 60S ribosomal protein L18a 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006952 defense response IEP Enrichment
BP GO:0007062 sister chromatid cohesion IEP Enrichment
BP GO:0007064 mitotic sister chromatid cohesion IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0009435 NAD biosynthetic process IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP Enrichment
BP GO:0019362 pyridine nucleotide metabolic process IEP Enrichment
BP GO:0019363 pyridine nucleotide biosynthetic process IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
CC GO:0031390 Ctf18 RFC-like complex IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046496 nicotinamide nucleotide metabolic process IEP Enrichment
BP GO:0072524 pyridine-containing compound metabolic process IEP Enrichment
BP GO:0072525 pyridine-containing compound biosynthetic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
InterPro domains Description Start Stop
IPR023573 Ribosomal_L18a//L18Ae/LX 11 132
No external refs found!