XM_003062101.1 (MicpuC2_48397, 48397)

Aliases : MicpuC2_48397, 48397

Description : Ribosomal protein S12/S23 [Interproscan].

Gene families : OG_01_0004164 (OrthoFinder) Phylogenetic Tree(s): OG0004164_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: XM_003062101.1
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001264.27 tig00001264_g7883.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 OrthoFinder
Cre12.g504200 30792072, RPS23 Protein biosynthesis.cytosolic ribosome.small subunit... 0.15 OrthoFinder
Cz02g32260.t1 No alias Ribosomal protein S12/S23 [Interproscan]. 0.13 OrthoFinder
Dusal.0029s00015.1 33203771 Ribosomal protein S12/S23 [Interproscan]. 0.12 OrthoFinder
EOD07302 No alias Ribosomal protein S12/S23 [Interproscan]. 0.1 OrthoFinder
EOD33195 No alias Ribosomal protein S12/S23 [Interproscan]. 0.1 OrthoFinder
OT_06G01850.1 No alias Ribosomal protein S12/S23 [Interproscan]. 0.06 OrthoFinder
PTI_02G00080.1 No alias Ribosomal protein S12/S23 [Interproscan]. 0.18 OrthoFinder
Sro922_g220630.1 Contig2958.g23506 40S ribosomal protein S23 0.21 OrthoFinder
SymbC1.scaffold7066.3 7066.3 Ribosomal protein S12/S23 [Interproscan]. 0.02 OrthoFinder
TP05G01460.1 No alias Ribosomal protein S12/S23 [Interproscan]. 0.19 OrthoFinder
XM_002499719.1 MICPUN_89912, 89912 Ribosomal protein S12/S23 [Interproscan]. 0.17 OrthoFinder
lcl|LHPG02000012.1_cds_PRW45112.1_1697 PRW45112 40S ribosomal S23 0.13 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497390.1_1119 KAA8497390 40S ribosomal protein S23 0.1 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004129 cytochrome-c oxidase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
CC GO:0005740 mitochondrial envelope IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006952 defense response IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
CC GO:0031967 organelle envelope IEP Enrichment
CC GO:0031975 envelope IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
InterPro domains Description Start Stop
IPR006032 Ribosomal_S12/S23 32 141
No external refs found!