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  5. XM_003061945.1

XM_003061945.1 (MicpuC2_4434, 4434)


Aliases : MicpuC2_4434, 4434

Description : DNA mismatch repair protein, MLH2/PMS1/Pms2 family (Pms1)


Gene families : OG_01_0000591 (OrthoFinder) Phylogenetic Tree(s): OG0000591_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003061945.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000057.93 tig00000057_g112.t1 DNA mismatch repair protein PMS1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00020610.82 tig00020610_g12029.t1 DNA damage response.DNA repair mechanisms.mismatch... 0.02 OrthoFinder
Cre01.g036050 30789431, MLH1 DNA damage response.DNA repair mechanisms.mismatch... 0.03 OrthoFinder
Cre04.g227000 30791345 DNA damage response.DNA repair mechanisms.mismatch... 0.04 OrthoFinder
Cz01g14030.t1 No alias DNA mismatch repair protein, S5 domain 2-like;... 0.02 OrthoFinder
Cz01g14050.t1 No alias DNA mismatch repair protein, S5 domain 2-like; DNA... 0.03 OrthoFinder
EOD30362 No alias Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase;... 0.01 OrthoFinder
EOD41900 No alias MutL, C-terminal, dimerisation; Histidine kinase-, DNA... 0.02 OrthoFinder
OT_06G04020.1 No alias MutL, C-terminal, dimerisation; DNA mismatch repair... 0.03 OrthoFinder
OT_13G02320.1 No alias DNA mismatch repair protein, S5 domain 2-like;... 0.02 OrthoFinder
Sro2629_g333080.1 Contig3211.g25384 Protein MutL 0.01 OrthoFinder
Vocar.0001s0720.1 32884462 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase;... 0.02 OrthoFinder
XM_002503161.1 MICPUN_96433, 96433 DNA mismatch repair and recombination (MLH1) 0.05 OrthoFinder
lcl|BLLF01000822.1_cds_GFH15220.1_9697 HaLaN_11412, GFH15220 DNA_mis_repair domain-containing protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
CC GO:0000152 nuclear ubiquitin ligase complex IEP Enrichment
BP GO:0000724 double-strand break repair via homologous recombination IEP Enrichment
BP GO:0000725 recombinational repair IEP Enrichment
CC GO:0000776 kinetochore IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003713 transcription coactivator activity IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005680 anaphase-promoting complex IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006515 protein quality control for misfolded or incompletely synthesized proteins IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008144 drug binding IEP Enrichment
MF GO:0008658 penicillin binding IEP Enrichment
MF GO:0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity IEP Enrichment
BP GO:0009143 nucleoside triphosphate catabolic process IEP Enrichment
BP GO:0010498 proteasomal protein catabolic process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
BP GO:0031144 proteasome localization IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
BP GO:0031503 protein-containing complex localization IEP Enrichment
MF GO:0033293 monocarboxylic acid binding IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0034629 cellular protein-containing complex localization IEP Enrichment
MF GO:0043138 3'-5' DNA helicase activity IEP Enrichment
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0071630 nuclear protein quality control by the ubiquitin-proteasome system IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR013507 DNA_mismatch_S5_2-like 123 240
No external refs found!