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  5. XM_003061919.1

XM_003061919.1 (MicpuC2_69996, 69996)


Aliases : MicpuC2_69996, 69996

Description : 5'-3' exoribonuclease 1, SH3-like domain [Interproscan].


Gene families : OG_01_0000264 (OrthoFinder) Phylogenetic Tree(s): OG0000264_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003061919.1
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
Cz03g05220.t1 No alias Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan]. 0.02 OrthoFinder
Cz15g12010.t1 No alias Putative 5-3 exonuclease; 5'-3' exoribonuclease 1,... 0.02 OrthoFinder
EOD26127 No alias 5'-3' exoribonuclease 1, SH3-like domain [Interproscan]. 0.03 OrthoFinder
OT_06G03410.1 No alias Putative 5-3 exonuclease; 5'-3' exoribonuclease 1,... 0.03 OrthoFinder
PTI_01G08170.1 No alias 5'-3' exoribonuclease 1, SH3-like domain; Xrn1, helical... 0.02 OrthoFinder
PTI_01G08180.1 No alias Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan]. 0.02 OrthoFinder
Sro386_g131870.1 Contig4061.g31128 5'-3' exoribonuclease 1 0.02 OrthoFinder
SymbC1.scaffold495.7 495.7 Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01001750.1_cds_GFH21041.1_15518 HaLaN_18267, GFH21041 5'-3' exoribonuclease 1 0.01 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59001.1_7182 PRW59001 5-3 exoribonuclease 1 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499911.1_8864 KAA8499911 5'-3' exoribonuclease 2 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0004424 imidazoleglycerol-phosphate dehydratase activity IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Enrichment
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Enrichment
MF GO:0016972 thiol oxidase activity IEP Enrichment
CC GO:0017119 Golgi transport complex IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
InterPro domains Description Start Stop
IPR041385 SH3_12 331 396
No external refs found!